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View Structure Prediction Details

Protein: DSC2_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSC2_SCHPO.

Description E-value Query
Range
Subject
Range
RBL15_ARATH - Rhomboid-like protein 15 OS=Arabidopsis thaliana GN=RBL15 PE=1 SV=2
259.0 [0..7] [348..19]
gi|49079820, gi|... - gi|71023631|ref|XP_762045.1| hypothetical protein UM05898.1 [Ustilago maydis 521], ref|XP_403513.1| ...
216.0 [0..1] [350..1]
gi|218193411 - gi|218193411|gb|EEC75838.1| hypothetical protein OsI_12827 [Oryza sativa Indica Group]
gi|41469223, gi|... - gi|50917257|ref|XP_469025.1| putative Rhomboid family protein (with alternative splicing) [Oryza sat...
209.0 [0..7] [351..19]
gi|46358911 - gi|46358911|gb|AAS88720.1| putative Der1-like family protein [Cynodon dactylon]
166.0 [0..1] [271..1]
gi|50758070 - gi|50758070|ref|XP_415746.1| PREDICTED: similar to carcinoma related gene [Gallus gallus]
166.0 [0..5] [210..129]
gi|41053839, gi|... - gi|41053839|ref|NP_957197.1| Der1-like domain family, member 3 [Danio rerio], gi|40352706|gb|AAH6466...
164.0 [0..2] [211..4]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSANIVPSN MGITKFLLLT ISTSSVVAGV FALKPFFHIN FGLHLLSHYQ YWRILLWQFI  60
   61 YWNSTEVFQA LFIIYQARDV ERLLGSHRFA SFCVYMFILG MFVTPIFSFL YSLLFKNLDY 120
  121 IQPGPTFLIF AILYQYYYIV PSTVFVRLFN IKFTDKFQMV IPMIGLAFSH FPSTFINAFL 180
  181 GWTMGMFYHL SLLP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 2ic8A
Description: No description for 2ic8A was found.

Predicted Domain #2
Region A:
Residues: [195-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTSWRLPIRF VKPALSPTHV FIRPPYSDMQ NASTFNPETL FALPTGLDAE RTENENQVEN  60
   61 PVSNADANDS PTRQNARATA IASSSNTAAS FRNRQQISHP PLGRTSSSSV LPTGPASQLY 120
  121 DMLSGRSERP ELGNIREEDI NTVQTIMQTS RAQAIQALSQ TNDVQRAVEL LLEQTADY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle