YRC Public Data Repository - Protein Structure Prediction

Protein:	MIS14_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIS14_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|68469176, gi\|... - gi\|77022720\|ref\|XP_888804.1\| hypothetical protein CaO19_6537 [Candida albicans SC5314], gi\|68470201\|... gi\|238883342 - gi\|238883342\|gb\|EEQ46980.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|76573617 - gi\|76573617\|dbj\|BAE44701.1\| hypothetical protein [Candida albicans]	195.0	[0..8]	[208..5]
gi\|42552289, gi\|... - gi\|46138527\|ref\|XP_390954.1\| hypothetical protein FG10778.1 [Gibberella zeae PH-1], gi\|42552289\|gb\|E...	192.0	[0..7]	[208..8]
gi\|39973895, gi\|... - gi\|39973895\|ref\|XP_368338.1\| hypothetical protein MGG_00906 [Magnaporthe grisea 70-15], gb\|EAA49248....	188.0	[0..7]	[208..5]
gi\|44984268 - gi\|44984268\|gb\|AAS53234.1\| AFL140Wp [Ashbya gossypii ATCC 10895] gi\|44984268, gi\|... - gi\|45198381\|ref\|NP_985410.1\| AFL140Wp [Ashbya gossypii ATCC 10895], gi\|44984268\|gb\|AAS53234.1\| AFL14...	180.0	[0..11]	[208..4]
gi\|49095344, gi\|... - gi\|67537652\|ref\|XP_662600.1\| hypothetical protein AN4996.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	179.0	[0..6]	[187..2]
gi\|151942568 - gi\|151942568\|gb\|EDN60914.1\| component of the MIND kinetochore complex [Saccharomyces cerevisiae YJM7... NSL1_YEAST - Kinetochore-associated protein NSL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSL1... NSL1 - Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins ... gi\|190407731 - gi\|190407731\|gb\|EDV10996.1\| protein required for cell viability [Saccharomyces cerevisiae RM11-1a]	173.0	[0..19]	[208..14]
gi\|83767541 - gi\|83767541\|dbj\|BAE57680.1\| unnamed protein product [Aspergillus oryzae] gi\|169770425 - gi\|169770425\|ref\|XP_001819682.1\| hypothetical protein [Aspergillus oryzae RIB40]	155.0	[0..8]	[209..4]
gi\|119195151, gi... - gi\|90306965\|gb\|EAS36596.1\| hypothetical protein CIMG_01950 [Coccidioides immitis RS], gi\|119195151\|r...	139.0	[0..6]	[200..2]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHGDASVL PKIALESIND YSYVKSVFRQ AIQEKLAIHL PEQASREAGM GREDQLRIRV  60
   61 KEMLNELIES TFSIIQENVT INGFDANSAL QDPKNSDQIE PFDLALRTRV QQLFNEVEDA 120
  121 HVLVARYRKS VPAQYEKAYV DAMEQQTAFL RNVKDDYVSL QDKEVENPDE QTSTTVFRKE 180
  181 DIDRYEQTIA KVAYLKKNLP RVVARLEKTP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.853872
Match:	PF08641.3
Description:	No description for PF08641.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits