YRC Public Data Repository - Protein Structure Prediction

Protein:	PER1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PER1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85115144 - gi\|85115144\|ref\|XP_964817.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926612, gi\|... - gi\|32418510\|ref\|XP_329733.1\| hypothetical protein [Neurospora crassa], gi\|28926612\|gb\|EAA35581.1\| hy...	412.0	[0..10]	[321..21]
gi\|38104157, gi\|... - gi\|39945090\|ref\|XP_362082.1\| hypothetical protein MG04527.4 [Magnaporthe grisea 70-15], gb\|EAA50768....	404.0	[0..8]	[321..8]
gi\|42545575, gi\|... - gi\|46108512\|ref\|XP_381314.1\| hypothetical protein FG01138.1 [Gibberella zeae PH-1], gi\|42545575\|gb\|E...	380.0	[0..8]	[321..12]
gi\|109491811 - gi\|109491811\|ref\|XP_001081396.1\| PREDICTED: similar to CAB2 protein [Rattus norvegicus]	378.0	[0..19]	[325..92]
gi\|55645329, gi\|... - gi\|55645329\|ref\|XP_511460.1\| PREDICTED: similar to Per1-like domain containing 1 isoform 3 [Pan trog...	370.0	[0..23]	[325..19]
gi\|148921986, gi... - gi\|152061011\|gb\|AAI48842.1\| Per1-like domain containing 1 [synthetic construct], gi\|148921986\|gb\|AAI... PGAP3_MOUSE - Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1	369.0	[0..19]	[325..15]
PGAP3 - post-GPI attachment to proteins 3	369.0	[0..23]	[325..19]
gi\|109114899 - gi\|109114899\|ref\|XP_001090781.1\| PREDICTED: similar to CAB2 protein isoform 2 [Macaca mulatta]	367.0	[0..23]	[325..19]
gi\|114194562, gi... - gi\|115389322\|ref\|XP_001212166.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	366.0	[0..7]	[326..12]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLRNFTIF FLFTALSLFR QISASAGDLH PVYVSCVNRC IENKCHGNPS DTSKLPLDLK  60
   61 LFRWDCGSNC GYECEITAEN YFAAHNLPSQ QYHGKWYFIR VFGIQELFSV FFSMLNFMIH 120
  121 YNGYHIMRRC IPDEHPAKRL CLSWAI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGMNAWVWSS VFHIRDTPIT EKLDYFSAGA FVLFGSYCTL ILMLRLDQLP GGKLLCWIIG  60
   61 VIFIAAFIAH VSYLSFYSFD YGYNMKANVA VGLVQNILWY YYSWSNRNSG LYWTRWPAYI 120
  121 VTSLMLATSL ELFDFSPIAN LIDAHALWHL STVPITHYLY GFVVRKCSYD LTKGTFKIKA 180
  181 YDSSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits