YRC Public Data Repository - Protein Structure Prediction

Protein:	DYLT1_MOUSE
Organism:	Mus musculus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DYLT1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|7512072, gi\|3... - pir\|\|JC6573 outer-arm dynein light chain 3 - sea urchin (Anthocidaris crassispina), gi\|3336986\|dbj\|... gi\|115951344, gi... - gi\|72009103\|ref\|XP_783725.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|115...	167.0	[0..1]	[113..1]
gi\|58332706, gi\|... - gi\|58332706\|ref\|NP_001011428.1\| dynein, light chain, Tctex-type 1 [Xenopus (Silurana) tropicalis], g... gi\|284521647\|ref... - dynein, light chain, Tctex-type 1 [Xenopus laevis], dynein, light chain, Tctex-type 1 [Xenopus laevi...	164.0	[0..1]	[113..1]
gi\|76674272 - gi\|76674272\|ref\|XP_869108.1\| PREDICTED: similar to T-complex associated-testis-expressed 1-like (Pro...	163.0	[0..1]	[113..70]
gi\|50730129 - gi\|50730129\|ref\|XP_416782.1\| PREDICTED: similar to T-complex associated-testis-expressed 1-like (Pro...	162.0	[0..1]	[113..196]
gi\|123984375, gi... - gi\|123998343\|gb\|ABM86773.1\| dynein, light chain, Tctex-type 1 [synthetic construct], gi\|123998341\|gb... DYLT1_BOVIN - Dynein light chain Tctex-type 1 OS=Bos taurus GN=DYNLT1 PE=1 SV=1 ENSCJAT00000007120 - null gi\|73946187 - gi\|73946187\|ref\|XP_855031.1\| PREDICTED: similar to Cytoplasmic dynein light chain (T-complex testis-... DYNLT1 - dynein, light chain, Tctex-type 1 gi\|55627652, gi\|... - gi\|55627652\|ref\|XP_518829.1\| PREDICTED: t-complex-associated-testis-expressed 1-like 1 isoform 3 [Pa...	162.0	[0..1]	[113..1]
gi\|113195655, gi... - gi\|84453003\|dbj\|BAE71139.1\| Tctex1-related dynein light chain [Ciona intestinalis], gi\|113195655\|ref...	162.0	[0..1]	[113..1]
gi\|3789929 - gi\|3789929\|gb\|AAC67546.1\| dynein molecular motor protein light chain [Torpedo californica]	161.0	[0..1]	[113..1]
DYLT1_RAT - Dynein light chain Tctex-type 1 OS=Rattus norvegicus GN=Dynlt1 PE=1 SV=1	160.0	[0..1]	[113..1]
gi\|62901866 - gi\|62901866\|gb\|AAY18884.1\| TCTE1-like [synthetic construct]	160.0	[0..2]	[113..26]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDFQASEET AFVVDEVSSI VKEAIESAIG GNAYQHSKVN QWTTNVLEQT LSQLTKLGRP  60
   61 FKYIVTCVIM QKNGAGLHSA SSCFWDSSTD GSCTVRWENK TMYCIVSTFG LSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1xdxA
Description:	Solution Structure of the Tctex1 Light Chain From Chlamydomonas Inner Dynein Arm I1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits