YRC Public Data Repository - Protein Structure Prediction

Protein:	YJ2B_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJ2B_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|37199524, gi\|... - gi\|37680775\|ref\|NP_935384.1\| cell division protein BolA [Vibrio vulnificus YJ016], gi\|37199524\|dbj\|B...	121.0	[0..21]	[116..14]
gi\|109483520, gi... - gi\|109484741\|ref\|XP_001073216.1\| PREDICTED: similar to BolA-2 protein [Rattus norvegicus], gi\|109483...	120.0	[0..13]	[112..69]
gi\|39940840, gi\|... - gi\|39940840\|ref\|XP_359957.1\| hypothetical protein MGG_11028 [Magnaporthe grisea 70-15], gb\|EAA47203....	119.0	[0..29]	[115..4]
gi\|209743876, gi... - pir\|\|BVECBA bolA protein - Escherichia coli (strain K-12), gi\|41070\|emb\|CAA35633.1\| unnamed protein... gi\|81244334, gi\|... - gi\|82542923\|ref\|YP_406870.1\| possible regulator of murein genes [Shigella boydii Sb227], gi\|81244334... gi\|24050609, gi\|... - gi\|24111818\|ref\|NP_706328.1\| possible regulator of murein genes [Shigella flexneri 2a str. 301], gi\|... gi\|26246443, gi\|... - gi\|26246443\|ref\|NP_752482.1\| BolA protein [Escherichia coli CFT073], gi\|26106841\|gb\|AAN79026.1\|AE016... gi\|73854487, gi\|... - gi\|74311010\|ref\|YP_309429.1\| possible regulator of murein genes [Shigella sonnei Ss046], gi\|73854487... gi\|30061937, gi\|... - gi\|30061937\|ref\|NP_836108.1\| possible regulator of murein genes [Shigella flexneri 2a str. 2457T], g... gi\|82775659, gi\|... - gi\|82775659\|ref\|YP_402006.1\| possible regulator of murein genes [Shigella dysenteriae Sd197], gi\|812... gi\|49176023, gi\|... - gi\|49176023\|ref\|NP_414969.3\| possible regulator of murein genes [Escherichia coli K12], gb\|AAC73538.... gi\|15800165, gi\|... - gi\|15800165\|ref\|NP_286177.1\| possible regulator of murein genes [Escherichia coli O157:H7 EDL933], g... gi\|226898781, gi... - gi\|237707571\|ref\|ZP_04538052.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7 str. Sakai] gi\|91071080, gi\|... - gi\|91209506\|ref\|YP_539492.1\| BolA transcriptional regulator [Escherichia coli UTI89], gi\|91071080\|gb... gi\|115511819, gi... - gi\|117622695\|ref\|YP_851608.1\| regulator of penicillin binding proteins and beta lactamase transcript... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7]	118.0	[0..25]	[113..7]
gi\|68393740 - gi\|68393740\|ref\|XP_701456.1\| PREDICTED: hypothetical protein XP_696364 [Danio rerio]	118.0	[0..7]	[116..7]
gi\|190407153 - gi\|190407153\|gb\|EDV10420.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] FRA2 - Protein involved in negative regulation of transcription of iron regulon; forms an iron independent ... FRA2_YEAST - Fe repressor of activation 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRA2 PE=1 S...	118.0	[0..16]	[109..22]
gi\|76794909, gi\|... - gi\|76794909\|ref\|ZP_00777362.1\| BolA-like protein [Pseudoalteromonas atlantica T6c], gi\|76589816\|gb\|E...	117.0	[0..30]	[116..1]
gi\|70731676, gi\|... - gi\|70731676\|ref\|YP_261418.1\| bolA protein [Pseudomonas fluorescens Pf-5], gi\|68345975\|gb\|AAY93581.1\|...	115.0	[0..30]	[116..1]
gi\|26988488, gi\|... - gi\|26988488\|ref\|NP_743913.1\| BolA family protein [Pseudomonas putida KT2440], gi\|24983252\|gb\|AAN6737... gi\|82740176, gi\|... - gi\|82740176\|ref\|ZP_00902926.1\| bolA protein [Pseudomonas putida F1], gi\|82712747\|gb\|EAP47911.1\| bolA... tr\|E4RDU5\|E4RDU5... - BolA OS=Pseudomonas putida (strain BIRD-1) GN=bolA PE=3 SV=1	115.0	[0..30]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAIGRLLS PLFLKNPQKP LIITKRFYST PGERRIKDIL TEKLSPSSLR VIDVSGGCGS  60
   61 MYQVAIKSKA FQGKNTLAQH RLVNSILKEE IRNMHGLNLS TEVEDDISAG GSTTSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1v9jA
Description:	Solution structure of a BolA-like protein from Mus musculus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits