YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109131916
Organism:	Macaca mulatta
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109131916.

Description	E-value	Query Range	Subject Range
AMER1_PONPY - AMME syndrome candidate gene 1 protein homolog - Pongo pygmaeus (Orangutan) AMMR1_PONAB - AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1	0.0	[1..333]	[1..333]
gi\|74008099 - gi\|74008099\|ref\|XP_549183.2\| PREDICTED: similar to AMME syndrome candidate gene 1 protein isoform 1 ...	0.0	[1..333]	[1..332]
gi\|76659110 - gi\|76659110\|ref\|XP_872852.1\| PREDICTED: similar to AMME syndrome candidate gene 1 protein [Bos tauru...	0.0	[36..333]	[7..304]
AMMR1_MOUSE - AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1 gi\|151556656, gi... - gi\|157170502\|gb\|AAI53031.1\| Alport syndrome, mental retardation, midface hypoplasia and elliptocytos...	0.0	[1..333]	[1..344]
gi\|45767818 - gi\|45767818\|gb\|AAH67667.1\| Zgc:66100 protein [Danio rerio]	0.0	[1..333]	[14..322]
gi\|47219410 - gi\|47219410\|emb\|CAG01573.1\| unnamed protein product [Tetraodon nigroviridis]	0.0	[1..333]	[1..321]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGCCGVKK QKLSSSPPSG SGGGGGASSS SHCSGESQCR AGELGLGGAG TRLNGLGGLT  60
   61 GGGSGSGCTL SPPQGCGGGG GGIALSPPPS CGVGTLLSTP AAATSSSPSS SSAASSSSPG 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [121-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRKMVVSAEM CCFCFDVLYC HLYGYQQPRT PRFTNEPYPL FVTWKIGRDK RLRGCIGTFS  60
   61 AMNLHSGLRE YTLTSALKDS RFPPMTRDEL PRLFCSVSLL TNFEDVCDYL DWEVGVHGIR 120
  121 IEFINEKGSK RTATYLPEVA KEQGWDHIQT IDSLLRKGGY KAPITNEFRK TIKLTRYRSE 180
  181 KMTLSYAEYL AHRQHHHFQN GIGHPLPPYN HYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1vajA
Description:	Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits