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View Structure Prediction Details

Protein: SLD2_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 337 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLD2_SCHPO.

Description E-value Query
Range
Subject
Range
RECQ4_MOUSE - ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
221.0 [0..9] [204..3]
gi|109480939 - gi|109480939|ref|XP_216973.4| PREDICTED: similar to RecQ protein-like 4 [Rattus norvegicus]
207.0 [0..9] [189..3]
SLD2_NEUCR - DNA replication regulator sld-2 OS=Neurospora crassa GN=sld-2 PE=3 SV=1
SLD2_NEUCR - DNA replication regulator sld-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / ...
170.0 [0..3] [206..2]
SLD2_GIBZE - DNA replication regulator SLD2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31...
SLD2_GIBZE - DNA replication regulator SLD2 OS=Gibberella zeae GN=SLD2 PE=3 SV=1
156.0 [0..3] [184..2]
RECQL4 - RecQ protein-like 4
146.0 [0..13] [204..7]
SLD2_CANAL - DNA replication regulator SLD2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SLD2 PE=3 SV=1
SLD2_CANAL - DNA replication regulator SLD2 OS=Candida albicans GN=SLD2 PE=3 SV=1
146.0 [0..10] [188..3]
SLD2_EMENI - DNA replication regulator sld2 OS=Emericella nidulans GN=sld2 PE=3 SV=1
SLD2_EMENI - DNA replication regulator sld2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NR...
143.0 [0..7] [183..10]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDESRTKQI SSIKALLKKW EHEYVHTNNC KPSKEDVKKQ PEIALLYKQY YELKRESSIT  60
   61 PKKAKTKVDF KFQTPTKQRA ETEANESPKA PRNDYLQVTP KTVDKSLLGP TPQLSRRVLN 120
  121 LLEDMSPI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSHVDQISD IKHNTSEISS TMIPTTPSKN PEPVAQHTPT VLETPSSYRL QVYTSPNLLR  60
   61 VNAPCRKSLS EMLRELKDIE DDYGSNEEKI LQEFESFSSS SSESLVDRDI SQPMKKKIKR 120
  121 QNRLVKLPPS MNLSKSHLEG LPEIDEDAEN GIDDNEDTTA SKDSSPFLDL QSERQNKKIM 180
  181 RNGLVIGKQV SQNYSSYKLK KRKFRRHRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle