YRC Public Data Repository - Protein Structure Prediction

Protein:	YDQ4_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDQ4_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42549437, gi\|... - gi\|46128625\|ref\|XP_388866.1\| hypothetical protein FG08690.1 [Gibberella zeae PH-1], gi\|42549437\|gb\|E...	307.0	[0..10]	[452..197]
orf19.1407 - orf19.1407 CGDID:CAL0004464 Assembly 19, Contig19-1781 (1192, 2532) CDS, translated using codon tabl... gi\|68492362, gi\|... - gi\|68492362\|ref\|XP_710053.1\| potential Auxin Efflux Carrier protein [Candida albicans SC5314], gi\|46...	278.0	[0..1]	[452..1]
gi\|44984654, gi\|... - gi\|45198644\|ref\|NP_985673.1\| AFR126Wp [Ashbya gossypii ATCC 10895], gi\|44984654\|gb\|AAS53497.1\| AFR12... gi\|44984654 - gi\|44984654\|gb\|AAS53497.1\| AFR126Wp [Ashbya gossypii ATCC 10895]	262.0	[0..11]	[452..8]
gi\|25406102, gi\|... - pir\|\|D96735 hypothetical protein F23N20.8 [imported] - Arabidopsis thaliana, gi\|19310751\|gb\|AAL8510...	249.0	[0..2]	[449..3]
gi\|49652436, gi\|... - gi\|50408337\|ref\|XP_456772.1\| hypothetical protein DEHA0A10406g [Debaryomyces hansenii CBS767], gi\|49...	245.0	[0..11]	[451..7]
gi\|113623138, gi... - gi\|50941889\|ref\|XP_480472.1\| auxin efflux carrier protein-like [Oryza sativa (japonica cultivar-grou... gi\|125560414 - gi\|125560414\|gb\|EAZ05862.1\| hypothetical protein OsI_28096 [Oryza sativa Indica Group]	244.0	[0..1]	[444..1]
gi\|49642479\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|49642479, gi\|... - gi\|50306741\|ref\|XP_453345.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642479\|emb\|CAH0044...	241.0	[0..1]	[452..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFSSLGQI NVWSLLRPII ESDLEVIVIA LGGYVLAKKG FLPRDAQKVI SSLNVYFFTP  60
   61 CLVFEKVGNG LNLKMLIDLS LLPVFYVIIS AASILISFLL AKLFRLTPRQ RNFATACITF 120
  121 QNSNSLPLAL VSSLATTVKD LLWDKIPDDT PDKVASRGIM YLLIFSQLGQ ALRWSYGYRI 180
  181 LL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.823909
Match:	PF03547.9
Description:	No description for PF03547.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNQPEDPLP IGNRSWSHSD VNEEEIQNLL ASSANVDGVQ NSVQANEGST VQTDSSAISK  60
   61 NDNVQVETSN EEVGGFGAAS SK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.39
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [265-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISKFIVLLLD FFSPPLYSLF IALFIAVVPP LQRFFFEEGS FVEGSITSGI RMAGQVAVPM  60
   61 ILVVLGASLA TDISKTEPTQ EVRKNNDTRV IIVCLLGRMV VVPLALLPAF SLLSYFSEIS 120
  121 TVDDPVFVVV IFLLVGSPTA IQLTQICQLN GVFERECAKV LWWSYAVFTP PNSLLLAFAS 180
  181 LLVVKWTK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.102373
Match:	PF03547.9
Description:	No description for PF03547.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits