YRC Public Data Repository - Protein Structure Prediction

Protein:	HGH1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGH1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|45184674, gi\|... - gi\|45184674\|ref\|NP_982392.1\| AAL150Wp [Ashbya gossypii ATCC 10895], gi\|44980020\|gb\|AAS50216.1\| AAL15... gi\|44980020 - gi\|44980020\|gb\|AAS50216.1\| AAL150Wp [Ashbya gossypii ATCC 10895]	404.0	[0..2]	[341..3]
HGH1_YEAST - Protein HGH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HGH1 PE=1 SV=2 HGH1 - Nonessential protein of unknown function; predicted to be involved in ribosome biogenesis; green flu...	404.0	[0..2]	[341..3]
gi\|42552623, gi\|... - gi\|46121703\|ref\|XP_385406.1\| hypothetical protein FG05230.1 [Gibberella zeae PH-1], gi\|42552623\|gb\|E...	403.0	[0..2]	[355..3]
orf19.12056, orf... - HGH1 CGDID:CAL0002914 Assembly 19, Contig19-10212 (39925, 38837) CDS, reverse complemented, translat... gi\|46444804, gi\|... - gi\|68466354\|ref\|XP_722659.1\| hypothetical protein CaO19.4587 [Candida albicans SC5314], gi\|68466059\|...	395.0	[0..2]	[355..3]
gi\|32417104, gi\|... - gi\|32417104\|ref\|XP_329030.1\| hypothetical protein [Neurospora crassa], gi\|28924145\|gb\|EAA33301.1\| hy... gi\|85108238 - gi\|85108238\|ref\|XP_962537.1\| hypothetical protein NCU08324 [Neurospora crassa OR74A]	390.0	[0..2]	[355..3]
HGH1_MOUSE - Protein HGH1 homolog OS=Mus musculus GN=Hgh1 PE=1 SV=1	387.0	[0..2]	[349..25]
gi\|49524953 - gi\|49524953\|emb\|CAG58559.1\| unnamed protein product [Candida glabrata] gi\|50286439, gi\|... - gi\|50286439\|ref\|XP_445648.1\| unnamed protein product [Candida glabrata], gi\|49524953\|emb\|CAG58559.1\|...	379.0	[0..2]	[341..3]
gi\|39951717, gi\|... - gi\|39951717\|ref\|XP_363575.1\| hypothetical protein MG01501.4 [Magnaporthe grisea 70-15], gb\|EAA55850....	374.0	[0..2]	[331..3]
gi\|109087722 - gi\|109087722\|ref\|XP_001090013.1\| PREDICTED: similar to brain protein 16 [Macaca mulatta]	372.0	[0..3]	[349..21]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELIELVGF LHDQNPQVRM LAVQHLLPYT ARNHPQFSIW FHNDFEPVKD LKALLKDKPQ  60
   61 IASQAVTALV NVSQNEKVRK VLMDDEFLQL IFSIVTNPLH GLADLSCMLL CNLAKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	1xm9A
Description:	Structure of the armadillo repeat domain of plakophilin 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [117-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDFARILDMQ VPLREFSLSK NIIDQLMDLF VKGTDHGINE YANFDFLANV FADMTRFERG  60
   61 RKYFTTLQEY DHVIPASKLV VFTEHKSLLR RTGVAAIIKN ISFDIPFQKV LMDEEGINVL 120
  121 PYLLLPLAGP EELSEEDMDG MFDELQLLPD DKKREPDHFI MKTLVETLVL LTATREGREH 180
  181 MRRRKVYPII RELHLNVDDE EIREVCDQLV QMLVRDEAPE ELEHIQDNPP DEDDVIVEVD 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	1xm9A
Description:	Structure of the armadillo repeat domain of plakophilin 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits