YRC Public Data Repository - Protein Structure Prediction

Protein:	VPH2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPH2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|49641236 - gi\|49641236\|emb\|CAH02497.1\| KLLA0B12870p [Kluyveromyces lactis] gi\|49641236, gi\|... - gi\|50304309\|ref\|XP_452104.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641236\|emb\|CAH0249...	62.0	[0..64]	[137..106]
gi\|50426753, gi\|... - gi\|50426753\|ref\|XP_461974.1\| hypothetical protein DEHA0G10692g [Debaryomyces hansenii CBS767], gi\|49...	53.0	[0..82]	[139..125]
gi\|49645503 - gi\|49645503\|emb\|CAG83558.1\| YALI0A01001p [Yarrowia lipolytica] gi\|49645503, gi\|... - gi\|50542944\|ref\|XP_499638.1\| YALI0A01001p [Yarrowia lipolytica], gi\|49645503\|emb\|CAG83558.1\| unnamed...	49.0	[0..82]	[156..223]
gi\|49528032 - gi\|49528032\|emb\|CAG61683.1\| unnamed protein product [Candida glabrata] gi\|50292575, gi\|... - gi\|50292575\|ref\|XP_448720.1\| unnamed protein product [Candida glabrata], gi\|49528032\|emb\|CAG61683.1\|...	46.0	[0..80]	[139..123]

Back

Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKELRLHNR NINFLEFLRG VQIVPSDSVF LGEIDENSHT QDNTTTSILK EKELYDGIPL  60
   61 LPSMAGVSMD PEREKKSELR LMKNQISAII NILFTVVGTV TAVWYCTSSL SIEKKIALCA 120
  121 FSAILVLVAD TFLYVRYLSA QPVRTSKNHT RQIIYTWTTN DPVLQSNEQL AIELGAIPSL 180
  181 KEKKNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits