YRC Public Data Repository - Protein Structure Prediction

Protein:	RM32_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM32_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|145013756, gi... - gi\|39977685\|ref\|XP_370230.1\| hypothetical protein MGG_06727 [Magnaporthe grisea 70-15], gb\|EAA55070....	112.0	[0..1]	[103..17]
gi\|3006125 - gi\|3006125\|emb\|CAA06176.1\| hypothetical protein [Thermoanaerobacterium thermosaccharolyticum] gi\|3006125\|emb\|C... - hypothetical protein [Thermoanaerobacterium thermosaccharolyticum]	107.0	[0..26]	[101..148]
gi\|46123313, gi\|... - gi\|46123313\|ref\|XP_386210.1\| hypothetical protein FG06034.1 [Gibberella zeae PH-1], gi\|42551301\|gb\|E...	105.0	[0..7]	[103..16]
gi\|49087094, gi\|... - gi\|67521872\|ref\|XP_658997.1\| hypothetical protein AN1393.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	101.0	[0..8]	[103..25]
gi\|15887467, gi\|... - gi\|15887467\|ref\|NP_353148.1\| 50S ribosomal protein L32 [Agrobacterium tumefaciens str. C58], gi\|1515... gi\|25519844 - gi\|25519844\|pir\|\|D97372 50S ribosomal protein L32 [imported] - Agrobacterium tumefaciens (strain C58...	99.0	[0..19]	[101..9]
RL32_JANSC - 50S ribosomal protein L32 OS=Jannaschia sp. (strain CCS1) GN=rpmF PE=3 SV=1	96.0	[0..47]	[101..1]
gi\|114544451, gi... - gi\|114762841\|ref\|ZP_01442273.1\| ribosomal protein L32 [Roseovarius sp. HTCC2601], gi\|114544451\|gb\|EA...	95.0	[0..47]	[101..1]
RL32_RUEST - 50S ribosomal protein L32 OS=Ruegeria sp. (strain TM1040) GN=rpmF PE=3 SV=1	94.0	[0..47]	[101..1]
RL32_SILPO - 50S ribosomal protein L32 OS=Silicibacter pomeroyi GN=rpmF PE=3 SV=1 RL32_RUEPO - 50S ribosomal protein L32 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmF PE=3...	94.0	[0..47]	[101..1]

Back

Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLRGNSLA ISQKMLSVFQ ASALPHISLR IFISPPSIAN IWNSILLAVP KKKTSYTKKR  60
   61 SRLLSGKALK DKTVNRCPIC GSFKLAHHLC SHCFRNIRRE FNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1nwxZ
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits