YRC Public Data Repository - Protein Structure Prediction

Protein:	COX13_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX13_SCHPO.

Description	E-value	Query Range	Subject Range
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	151.0	[0..35]	[130..16]
gi\|46129425, gi\|... - gi\|46129425\|ref\|XP_389064.1\| hypothetical protein FG08888.1 [Gibberella zeae PH-1], gi\|42549219\|gb\|E...	149.0	[0..12]	[128..7]
CX6A1_RAT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2	149.0	[0..35]	[130..18]
COX13 - Subunit VIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membran... gi\|151943625 - gi\|151943625\|gb\|EDN61935.1\| cytochrome c oxidase subunit VIa [Saccharomyces cerevisiae YJM789] gi\|190407131 - gi\|190407131\|gb\|EDV10398.1\| cytochrome c oxidase subunit VIa [Saccharomyces cerevisiae RM11-1a] COX13_YEAST - Cytochrome c oxidase subunit 6A, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...	148.0	[0..12]	[130..6]
gi\|114607227, gi... - gi\|55626522\|ref\|XP_518442.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-live...	148.0	[0..35]	[130..16]
gi\|13277855, gi\|... - gi\|74151378\|dbj\|BAE38808.1\| unnamed protein product [Mus musculus], gi\|6680988\|ref\|NP_031774.1\| cyto...	147.0	[0..35]	[130..19]
CX6A1_RABIT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1	146.0	[0..38]	[130..19]
gi\|73995307 - gi\|73995307\|ref\|XP_534704.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIa-liver, mitoc...	144.0	[0..39]	[130..21]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMMNRNIGF LSRTLKTSVP KRAGLLSFRA YSNEAKVNWL EEVQAEEEHA KRSSEFWKKV  60
   61 TYYIGGPALI LASANAYYIY CKHQEHAKHV EDTDPGYSFE NLRFKKYPWG DGSKTLFWND 120
  121 KVNHLKKDDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1occG
Description:	Mitochondrial cytochrome c oxidase subunit VIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	8.55593054200713	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	8.55593054200713	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	8.55593054200713	bayes_pls_golite062009
heme-copper terminal oxidase activity	8.33310447684473	bayes_pls_golite062009
oxidoreductase activity	4.93709142475202	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.42266067775966	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.27737232830687	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.64965096433631	bayes_pls_golite062009
cation transmembrane transporter activity	2.41719119401631	bayes_pls_golite062009
ion transmembrane transporter activity	2.22093703573522	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: