YRC Public Data Repository - Protein Structure Prediction

Protein:	HOP2_MOUSE
Organism:	Mus musculus
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOP2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|77628027 - gi\|77628027\|ref\|NP_604453.2\| proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting prot...	175.0	[0..1]	[217..1]
gi\|74225665 - gi\|74225665\|dbj\|BAE21670.1\| unnamed protein product [Mus musculus]	169.0	[0..1]	[217..1]
gi\|73965693 - gi\|73965693\|ref\|XP_849346.1\| PREDICTED: similar to TBP-1 interacting protein isoform 2 isoform 2 [Ca...	163.0	[0..1]	[217..1]
gi\|114667208 - gi\|114667208\|ref\|XP_001164255.1\| PREDICTED: TBP-1 interacting protein isoform 2 [Pan troglodytes]	159.0	[0..1]	[217..1]
gi\|109115501 - gi\|109115501\|ref\|XP_001110543.1\| PREDICTED: similar to TBP-1 interacting protein isoform 2 isoform 2...	158.0	[0..1]	[217..1]
gi\|17017304 - gi\|17017304\|gb\|AAL33609.1\|AF440240_1 nuclear receptor coactivator GT198 [Homo sapiens]	156.0	[0..1]	[217..1]
gi\|76645059 - gi\|76645059\|ref\|XP_585318.2\| PREDICTED: similar to TBP-1 interacting protein isoform 1 [Bos taurus]	156.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSRAEAAA GAPGIILRYL QEQNRPYSAQ DVFGNLQKEH GLGKAAVVKA LDQLAQEGKI  60
   61 KEKTYGKQKI YFADQNQFDT VSDADLHGLD ASIVALTAKV QSLQQSCRHM EAELKELTSA 120
  121 LTTPEMQKEI QELKKECAQY TERLKNIKAA TNHVTPEEKE KVYRDRQKYC KEWRKRKRMT 180
  181 TELCDAILEG YPKSKKQFFE EVGIETDEDH NVLLPDP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits