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View Structure Prediction Details

Protein: HOP2_MOUSE
Organism: Mus musculus
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOP2_MOUSE.

Description E-value Query
Range
Subject
Range
gi|77628027 - gi|77628027|ref|NP_604453.2| proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting prot...
175.0 [0..1] [217..1]
gi|74225665 - gi|74225665|dbj|BAE21670.1| unnamed protein product [Mus musculus]
169.0 [0..1] [217..1]
gi|73965693 - gi|73965693|ref|XP_849346.1| PREDICTED: similar to TBP-1 interacting protein isoform 2 isoform 2 [Ca...
163.0 [0..1] [217..1]
gi|114667208 - gi|114667208|ref|XP_001164255.1| PREDICTED: TBP-1 interacting protein isoform 2 [Pan troglodytes]
159.0 [0..1] [217..1]
gi|109115501 - gi|109115501|ref|XP_001110543.1| PREDICTED: similar to TBP-1 interacting protein isoform 2 isoform 2...
158.0 [0..1] [217..1]
gi|17017304 - gi|17017304|gb|AAL33609.1|AF440240_1 nuclear receptor coactivator GT198 [Homo sapiens]
156.0 [0..1] [217..1]
gi|76645059 - gi|76645059|ref|XP_585318.2| PREDICTED: similar to TBP-1 interacting protein isoform 1 [Bos taurus]
156.0 [0..1] [217..1]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSRAEAAA GAPGIILRYL QEQNRPYSAQ DVFGNLQKEH GLGKAAVVKA LDQLAQEGKI  60
   61 KEKTYGKQKI YFADQNQFDT VSDADLHGLD ASIVALTAKV QSLQQSCRHM EAELKELTSA 120
  121 LTTPEMQKEI QELKKECAQY TERLKNIKAA TNHVTPEEKE KVYRDRQKYC KEWRKRKRMT 180
  181 TELCDAILEG YPKSKKQFFE EVGIETDEDH NVLLPDP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle