YRC Public Data Repository - Protein Structure Prediction

Protein:	UCN3_MOUSE
Organism:	Mus musculus
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCN3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|122427915, gi... - gi\|62663790\|ref\|XP_574076.1\| PREDICTED: similar to Urocortin-3 precursor (Urocortin III) (Ucn III) [...	264.0	[0..1]	[164..1]
gi\|111185665 - gi\|111185665\|gb\|AAI19435.1\| Ucn3 protein [Mus musculus]	252.0	[0..2]	[164..1]
gi\|72533638, gi\|... - gi\|72533638\|gb\|AAI00868.1\| Urocortin 3 (stresscopin) [Homo sapiens], gi\|56206958\|emb\|CAI23624.1\| uro...	249.0	[0..1]	[164..1]
gi\|114629179 - gi\|114629179\|ref\|XP_507632.2\| PREDICTED: urocortin 3 [Pan troglodytes]	234.0	[0..1]	[164..1]
gi\|109088107 - gi\|109088107\|ref\|XP_001104616.1\| PREDICTED: urocortin 3 (stresscopin) [Macaca mulatta]	222.0	[0..1]	[164..1]
gi\|73949184 - gi\|73949184\|ref\|XP_850955.1\| PREDICTED: similar to Urocortin III precursor (Ucn III) [Canis familiar...	203.0	[0..1]	[164..104]
gi\|94966424 - gi\|94966424\|dbj\|BAE94178.1\| urocortin 3 [Bos taurus]	163.0	[0..1]	[164..1]
gi\|50235042, gi\|... - gi\|50235042\|gb\|AAT70727.1\| urocortin 3 precursor [Xenopus laevis], gi\|213626689\|gb\|AAI69893.1\| Uroco...	157.0	[0..19]	[164..17]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPTYFLLP LLLLLGGPRT SLSHKFYNTG PVFSCLNTAL SEVKKNKLED VPLLSKKSFG  60
   61 HLPTQDPSGE EDDNQTHLQI KRTFSGAAGG NGAGSTRYRY QSQAQHKGKL YPDKPKSDRG 120
  121 TKFTLSLDVP TNIMNILFNI DKAKNLRAKA AANAQLMAQI GKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits