YRC Public Data Repository - Protein Structure Prediction

Protein:	IF5_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF5_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|73964075 - gi\|73964075\|ref\|XP_854659.1\| PREDICTED: similar to eukaryotic translation initiation factor 5 isofor...	438.0	[0..3]	[377..2]
IF5_RAT - Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1	425.0	[0..3]	[377..2]
IF5_MOUSE - Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1	424.0	[0..3]	[377..2]
gi\|147900740, gi... - gi\|27469870\|gb\|AAH41737.1\| Eif5-prov protein [Xenopus laevis], gi\|147900740\|ref\|NP_001080311.1\| euka...	424.0	[0..3]	[377..2]
gi\|114654960, gi... - gi\|114654966\|ref\|XP_001136203.1\| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes], gi\|114...	422.0	[0..3]	[377..2]
gi\|1229140 - gi\|1229140\|gb\|AAC50572.1\| translation initiation factor 5	421.0	[0..3]	[377..2]
gi\|53136315, gi\|... - gi\|57529904\|ref\|NP_001006488.1\| eukaryotic translation initiation factor 5 [Gallus gallus], gi\|53136...	420.0	[0..3]	[375..2]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATINIRRDV KDSFYRYRMP KLQSKIEGKG NGIKTVIPNM SDIAKALGRP PLYVTKFFGF  60
   61 ELGAQTTIIA DMDRYIVNGA HDAGKLQDLL DVFIRRFVLC ASCQNPETEL SINKKDQTIS 120
  121 YDCKACGYRG VIDGRHKLTG VIVKNPPAKK KSHKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.39794
Match:	2g2kA
Description:	No description for 2g2kA was found.

Predicted Domain #2

Region A:
Residues: [156-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRDSPVAEEE DGAEDELTRR IRQEAAELPT AEVVNDEDWA VDTSEEAVRA RVQELEGNMK  60
   61 DSLTLSDLRG DEEEAESSRY DQFGEWLEDN YPGVSDVEIY KKMKEENIHH KSKAIVVLVQ 120
  121 CIITSPYVGE FEKHGALFKK LCTTDKHERA LLGGFERLME NTELVHIDVV PKVLLEIYQN 180
  181 DLVSDDMFEK WGAKASKKYV SRETSKKIHE AAEPFLTWLA EASDESESED EEEEEEDDDE 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	2fulA
Description:	No description for 2fulA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits