YRC Public Data Repository - Protein Structure Prediction

Protein:	APR_MOUSE
Organism:	Mus musculus
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APR_MOUSE.

Description	E-value	Query Range	Subject Range
APR_RAT - Phorbol-12-myristate-13-acetate-induced protein 1 OS=Rattus norvegicus GN=Pmaip1 PE=3 SV=1	157.0	[0..1]	[103..1]
gi\|11276046, gi\|... - gi\|47523386\|ref\|NP_999312.1\| phorbol-12-myristate-13-acetate-induced protein 1 [Sus scrofa], gi\|1127...	139.0	[0..8]	[103..83]
gi\|109122354 - gi\|109122354\|ref\|XP_001091088.1\| PREDICTED: similar to phorbol-12-myristate-13-acetate-induced prote...	92.0	[0..31]	[103..133]
gi\|114673362 - gi\|114673362\|ref\|XP_001143422.1\| PREDICTED: phorbol-12-myristate-13-acetate-induced protein 1 isofor... PMAIP1 - phorbol-12-myristate-13-acetate-induced protein 1	78.0	[0..50]	[103..1]
APR_CANLF - Phorbol-12-myristate-13-acetate-induced protein 1 OS=Canis lupus familiaris GN=PMAIP1 PE=3 SV=1	74.0	[0..50]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRKARRNA PVNPTRAELP PEFAAQLRKI GDKVYCTWSA PDITVVLAQM PGKSQKSRMR  60
   61 SPSPTRVPAD LKDECAQLRR IGDKVNLRQK LLNLISKLFN LVT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits