YRC Public Data Repository - Protein Structure Prediction

Protein:	RS11B_SCHPO, RS1...
Organism:	Schizosaccharomyces pombe 972h-
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS11B_SCHPO, RS1....

Description	E-value	Query Range	Subject Range
gi\|60653355 - gi\|60653355\|gb\|AAX29372.1\| ribosomal protein S11 [synthetic construct]	235.0	[0..6]	[152..3]
gi\|13516490, gi\|... - gi\|71895103\|ref\|NP_001026004.1\| ribosomal protein S11 [Gallus gallus], gi\|13516490\|dbj\|BAB40319.1\| r...	234.0	[0..6]	[152..3]
tr\|G3I004\|G3I004... - 40S ribosomal protein S11 OS=Cricetulus griseus GN=I79_016673 PE=3 SV=1 tr\|M3WAZ1\|M3WAZ1... - Ribosomal protein S11 OS=Felis catus GN=RPS11 PE=3 SV=1 RS11_MOUSE - 40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=1 SV=3 tr\|G1TRM4\|G1TRM4... - pep:novel chromosome:oryCun2:2:132090106:132090582:1 gene:ENSOCUG00000027435 transcript:ENSOCUT00000... ENSCJAT00000000126 - null CCDS12769.1_1 - null gi\|114678487, gi... - gi\|55624058\|ref\|XP_517681.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146784... gi\|109125514, gi... - gi\|109125516\|ref\|XP_001115152.1\| PREDICTED: similar to ribosomal protein S11 isoform 2 [Macaca mulat... RPS11 - ribosomal protein S11 RS11_MACFA - 40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3 RS11_BOVIN - 40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3 gi\|187609269, gi... - gi\|73947970\|ref\|XP_533619.2\| PREDICTED: similar to ribosomal protein S11 [Canis familiaris], gi\|1876... gi\|124000091, gi... - gi\|60656399\|gb\|AAX32763.1\| ribosomal protein S11 [synthetic construct], gi\|124000091\|gb\|ABM87554.1\| ... RS11_RAT - 40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3	234.0	[0..6]	[152..3]
gi\|52346138, gi\|... - gi\|89269536\|emb\|CAJ82415.1\| ribosomal protein S11 [Xenopus tropicalis], gi\|52346138\|ref\|NP_001005113...	233.0	[0..6]	[152..3]
gi\|66792924, gi\|... - gi\|66792924\|ref\|NP_001019739.1\| ribosomal protein S11 [Bos taurus], gi\|58760444\|gb\|AAW82130.1\| ribos...	233.0	[0..6]	[152..3]
RS11_XENLA - 40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1	231.0	[0..6]	[152..3]
gi\|34849855 - gi\|34849855\|gb\|AAH58465.1\| Ribosomal protein S11 [Rattus norvegicus]	231.0	[0..6]	[152..3]
gi\|2960399 - gi\|2960399\|dbj\|BAA25142.1\| 40S ribosomal protein S11 [Cyprinus carpio]	228.0	[0..6]	[152..3]
gi\|166796237, gi... - gi\|47087057\|ref\|NP_998542.1\| ribosomal protein S11 [Danio rerio], gi\|28374437\|gb\|AAH46054.1\| Ribosom... gi\|187607467, gi... - gi\|187607467\|ref\|NP_001120304.1\| hypothetical protein LOC100145364 [Xenopus (Silurana) tropicalis], ...	228.0	[0..6]	[152..3]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATELVVQSE RAFQKQPHIF QNAKKGAGRR WYKDVGLGFK TPAEAIYGEY VDKKCPFVGQ  60
   61 VSIRGRILTG TVVSTKMHRT IIIRREYLHF IPKYNRYEKR HKNLAAHVSP AFRINEGDVV 120
  121 TVGQCRPLSK TVRFNVLRVV KHTEGPKQFG KF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1s1hQ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits