YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109481861, gi...
Organism:	Rattus norvegicus
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109481861, gi....

Description	E-value	Query Range	Subject Range
gi\|50728518 - gi\|50728518\|ref\|XP_416157.1\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	107.0	[0..1]	[75..205]
gi\|73978207 - gi\|73978207\|ref\|XP_539726.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	107.0	[0..1]	[75..195]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	107.0	[0..1]	[75..152]
gi\|33876795 - gi\|33876795\|gb\|AAH02505.2\| SNRPF protein [Homo sapiens]	104.0	[0..1]	[75..46]
gi\|74353864 - gi\|74353864\|gb\|AAI02193.1\| SNRPF protein [Bos taurus]	103.0	[0..1]	[75..34]
AGAP002658-PA - small nuclear ribonucleoprotein polypeptide F\|protein_coding\|2R:25205095:25205361:1\|gene:AGAP002658 gi\|31212897, gi\|... - gi\|31212897\|ref\|XP_312266.1\| AGAP002658-PA [Anopheles gambiae str. PEST], gi\|30177439\|gb\|EAA07677.2\|...	102.0	[0..2]	[86..4]
gi\|116059834 - gi\|116059834\|emb\|CAL55541.1\| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]	100.0	[0..1]	[79..758]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPLNPKPF LNGLTGKPVM VKLKWGMEYK GYLVSVDGYM NMQLANTEEY IDGALSGHLG  60
   61 EVLIRCNNVL YIRGVEEEEE DGEMRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	1n9rA
Description:	Small nuclear ribonucleoprotein F, Smf
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits