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View Structure Prediction Details

Protein: gi|109113229, gi...
Organism: Macaca mulatta
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109113229, gi....

Description E-value Query
Range
Subject
Range
gi|50754890 - gi|50754890|ref|XP_414531.1| PREDICTED: similar to ribosomal protein L26; 60S ribosomal protein L26 ...
2.0E-61 [1..145] [133..277]
gi|74220324 - gi|74220324|dbj|BAE31338.1| unnamed protein product [Mus musculus]
1.0E-50 [1..145] [1..145]
gi|109460638, gi... - gi|62638415|ref|XP_574290.1| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gene 20...
2.0E-50 [1..145] [1..145]
gi|48145773 - gi|48145773|emb|CAG33109.1| RPL26 [Homo sapiens]
3.0E-50 [1..145] [1..145]
gi|109075304 - gi|109075304|ref|XP_001086768.1| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gen...
5.0E-50 [1..145] [1..145]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNPFVTSD RSKNRKRHFN APSHIRRKIM SSPLSKELRQ KYNVRSMPIR KDDEVQVVRG  60
   61 HYKGQQIGKV VQVYRKKYVI YIERVQREKA NGTTVHVGIH PSKVVITRLK LDKDRKKILE 120
  121 RKAKSRQVGK EKGKYKEETI EKMQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.39794
Match: 1s1iU
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle