YRC Public Data Repository - Protein Structure Prediction

Protein:	SYN_YERPA
Organism:	Yersinia pestis Antiqua
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYN_YERPA.

Description	E-value	Query Range	Subject Range
gi\|77956525 - gi\|77956525\|ref\|ZP_00820617.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia bercovieri A... gi\|238795874, gi... - gi\|77963114\|ref\|ZP_00826927.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia mollaretii A...	0.0	[1..466]	[1..466]
gi\|238728303, gi... - gi\|77979213\|ref\|ZP_00834633.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia intermedia A...	0.0	[1..466]	[1..466]
gi\|238722626, gi... - gi\|77974872\|ref\|ZP_00830410.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia frederikseni...	0.0	[1..466]	[1..466]
gi\|89104665 - gi\|89104665\|ref\|ZP_01177202.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis biova...	0.0	[1..466]	[1..466]
SYN_SALTI - Asparagine--tRNA ligase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|29142358, gi\|... - gi\|29142358\|ref\|NP_805700.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALTI - Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|16759869 - gi\|16759869\|ref\|NP_455486.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=asnS PE=3 SV=1 SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1 gi\|213581037 - gi\|213581037\|ref\|ZP_03362863.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213612501 - gi\|213612501\|ref\|ZP_03370327.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213999484 - gi\|213999484\|ref\|ZP_03410219.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|238913227 - gi\|238913227\|ref\|ZP_04657064.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205271988, gi... - gi\|205352207\|ref\|YP_002226008.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|206708194, gi... - gi\|207856391\|ref\|YP_002243042.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213162084 - gi\|213162084\|ref\|ZP_03347794.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213424614 - gi\|213424614\|ref\|ZP_03357397.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|194470581, gi... - gi\|194470581\|ref\|ZP_03076565.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... gi\|194710132, gi... - gi\|194734630\|ref\|YP_002114055.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|197094351, gi... - gi\|197362874\|ref\|YP_002142511.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|197937846, gi... - gi\|198243330\|ref\|YP_002214926.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205332405, gi... - gi\|205332405\|gb\|EDZ19169.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|168237106, gi... - gi\|197289886\|gb\|EDY29247.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|195631055, gi... - gi\|195631055\|gb\|EDX49641.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205341479, gi... - gi\|205341479\|gb\|EDZ28243.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	0.0	[1..466]	[1..466]
SYN_ACTSZ - Asparagine--tRNA ligase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=asnS PE=3 SV=1	0.0	[2..466]	[3..467]
SYN_SHESM - Asparagine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1	0.0	[1..466]	[1..466]
gi\|194450065, gi... - gi\|194450065\|ref\|YP_002044994.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|197249609, gi... - gi\|197249609\|ref\|YP_002145920.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=asnS PE=3... gi\|200390273, gi... - gi\|200390273\|ref\|ZP_03216884.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... SYN_SALTY - Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|167993358, gi... - gi\|205328543\|gb\|EDZ15307.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=asnS] [protein=asparaginyl-tRNA synthetase] [protein_id=YP_005236722.1] [location=complement(1... gi\|205337229, gi... - gi\|205337229\|gb\|EDZ23993.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205346905, gi... - gi\|205346905\|gb\|EDZ33536.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|194443471, gi... - gi\|194443471\|ref\|YP_002040200.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|167552996, gi... - gi\|205322466\|gb\|EDZ10305.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	0.0	[1..466]	[1..466]
SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=asnS PE=3 SV=1 SYN_SALCH - Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1 gi\|224582810, gi... - gi\|224582810\|ref\|YP_002636608.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1	0.0	[1..466]	[1..466]
SYN_PHOLL - Asparaginyl-tRNA synthetase OS=Photorhabdus luminescens subsp. laumondii GN=asnS PE=3 SV=1 SYN_PHOLL - Asparagine--tRNA ligase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	0.0	[1..466]	[1..466]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVPVVDVL QGRAAVGSEV TVRGWVRTRR DSKAGISFVA VYDGSCFDPL QAVVNNTLPN  60
   61 YQDEVLHLTT GCSVEVTGTV VASPGEGQSF EIQATAINVV GWVDDPDTYP MAAKRHSIEY 120
  121 LREVAHLRPR TNLIGAVARV RHTLAQAIHR FFDENGYFWV STPLITASDT EGAGEMFRVS 180
  181 TLDLENLPRT DTGAVDFSED FFGKEAFLTV SGQLNGETYA CALSKVYTFG PTFRAENSNT 240
  241 SRHLAEFWMV EPEVAFASLD DVAGLAEKML KYVFQAVLNE RADDMKFFAE RVDKDAVDRL 300
  301 QRFVTSDFAQ VDYTDAIEIL LASGQKFEND VSWGIDLSSE HERYLAEKHF KAPVVVKNYP 360
  361 KDIKAFYMRM NEDGKTVAAM DVLAPGIGEI IGGSQREERL DVLDARLAEM GLNKEDYWWY 420
  421 RDLRRYGTVP HSGFGLGFER LISYVTGVQN VRDVIPFPRT PRNASF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits