YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165939954, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165939954, gi....

Description	E-value	Query Range	Subject Range
gi\|77961791 - gi\|77961791\|ref\|ZP_00825621.1\| COG0706: Preprotein translocase subunit YidC [Yersinia mollaretii ATC...	693.0	[0..1]	[546..1]
gi\|77958163 - gi\|77958163\|ref\|ZP_00822201.1\| COG0706: Preprotein translocase subunit YidC [Yersinia bercovieri ATC...	688.0	[0..1]	[546..1]
gi\|37528712, gi\|... - gi\|37528712\|ref\|NP_932057.1\| putative inner membrane protein translocase component YidC [Photorhabdu...	684.0	[0..1]	[545..1]
gi\|77976613 - gi\|77976613\|ref\|ZP_00832092.1\| COG0706: Preprotein translocase subunit YidC [Yersinia intermedia ATC...	683.0	[0..1]	[546..1]
gi\|77973774 - gi\|77973774\|ref\|ZP_00829319.1\| COG0706: Preprotein translocase subunit YidC [Yersinia frederiksenii ...	682.0	[0..1]	[546..1]
OXAA_ERWCT, YIDC... - Membrane protein insertase YidC OS=Erwinia carotovora subsp. atroseptica GN=yidC PE=3 SV=1, Inner me... YIDC_PECAS - Membrane protein insertase YidC OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=...	679.0	[0..1]	[545..1]
YIDC_SALPA, OXAA... - Membrane protein insertase YidC OS=Salmonella paratyphi A GN=yidC PE=3 SV=1, Inner membrane protein ... YIDC_SALPK - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain AKU_12601) GN=yidC PE=3 SV=1 YIDC_SALPA - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yidC PE=3 S... YIDC_SALA4 - Membrane protein insertase YidC OS=Salmonella agona (strain SL483) GN=yidC PE=3 SV=1 gi\|194468665, gi... - gi\|194468665\|ref\|ZP_03074649.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|195632342, gi... - gi\|195632342\|gb\|EDX50826.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... gi\|205331641, gi... - gi\|205331641\|gb\|EDZ18405.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALPB - Membrane protein insertase YidC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yidC PE=3... gi\|238913094 - gi\|238913094\|ref\|ZP_04656931.1\| putative inner membrane protein translocase component YidC [Salmonel... OXAA_SALPB - Inner membrane protein oxaA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=oxaA PE=3 SV=...	674.0	[0..1]	[546..1]
gi\|168260373, gi... - gi\|205350262\|gb\|EDZ36893.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... OXAA_SALTY - Inner membrane protein oxaA OS=Salmonella typhimurium GN=oxaA PE=3 SV=1 gi\|167548869, gi... - gi\|205325671\|gb\|EDZ13510.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALTY - Membrane protein insertase YidC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=y... gi\|200387745, gi... - gi\|200387745\|ref\|ZP_03214357.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|197243487, gi... - gi\|197265232\|ref\|ZP_03165306.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... OXAA_SALTY, YIDC... - Membrane protein insertase YidC OS=Salmonella typhimurium GN=yidC PE=3 SV=1, Inner membrane protein ... lcl\|NC_016856.1_... - [gene=yidC] [protein=putative inner membrane protein translocase component YidC] [protein_id=YP_0052...	673.0	[0..1]	[546..1]
YIDC_SALCH - Membrane protein insertase YidC OS=Salmonella choleraesuis (strain SC-B67) GN=yidC PE=3 SV=1 OXAA_SALCH - Inner membrane protein oxaA OS=Salmonella choleraesuis GN=oxaA PE=3 SV=1 OXAA_SALCH, YIDC... - Membrane protein insertase YidC OS=Salmonella choleraesuis GN=yidC PE=3 SV=1, Inner membrane protein...	669.0	[0..1]	[546..1]
gi\|192957453, gi... - gi\|75236428\|ref\|ZP_00720524.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli E11001...	668.0	[0..1]	[546..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQRNLLLI ALLFVSFMIW QAWQVDNNPQ PTAQTTQQTT NTATGDKASQ AVPGSGQGQL  60
   61 ITVKTDVLSL TINTRGGDIE QANLLAYPDT LGSSNTFELL ETTPSFVYQA QSGLTGKNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNPANGDRP LFEVPQTSFV LADGQDELRI PLTFTSKDGS VFIKTFVLKR NDYAIGVDYH  60
   61 VNNASAAPLE LTLFGQLKQS INLPKKRDTG SNNFALQTYR GAAYSSDETK YKKY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [234-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFSDIEDKNL DITTKGGWVA MLQQYFATAW IPAANETNTF YSAELGNGLA AIGFKGAPVV  60
   61 IQPGEQKQLS ATLWVGPEIQ NKMAEIAPHL DLTVDYG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [331-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLWFISQPLF KLLKFIHSFV GNWGFSIIVI TFIVRGIMYP LTKAQYTSMA KMRLLQPKLA  60
   61 AMRERIGDDK QRMSQEMMAL YKAEKVNPLG GCLPLIIQMP IFLALYYMLM SSVELRHAPF 120
  121 ILWIHDLSAQ DPYYILPILM GITMYFIQKM SPTTVTDPMQ QKIMTFMPVI FTVFFLWFPA 180
  181 GLVLYYIVSN LVTILQQQLI YRGLEKRGLH SREKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	120.958607
Match:	PF02096.8
Description:	No description for PF02096.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits