YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229904465, gi...
Organism:	Yersinia pestis Nepal516
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229904465, gi....

Description	E-value	Query Range	Subject Range
Q66GB1\|Q66GB1_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|51587711, gi\|... - gi\|51594429\|ref\|YP_068620.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosis IP... gi\|186893416, gi... - gi\|186893416\|ref\|YP_001870528.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosi...	7.0E-31	[1..162]	[1..162]
gi\|37528606, gi\|... - gi\|37528606\|ref\|NP_931951.1\| periplasmic protein precursor [Photorhabdus luminescens subsp. laumondi...	3.0E-27	[1..150]	[1..163]
gi\|7469947 - pir\|\|S74830 hypothetical protein sll0858 - Synechocystis sp. (strain PCC 6803) gi\|1652873, gi\|1... - gi\|1652873\|dbj\|BAA17791.1\| sll0858 [Synechocystis sp. PCC 6803], gi\|16330383\|ref\|NP_441111.1\| hypoth...	7.0E-27	[1..155]	[30..193]
gi\|82776812, gi\|... - gi\|82776812\|ref\|YP_403161.1\| periplasmic protein [Shigella dysenteriae Sd197], gi\|81240960\|gb\|ABB616...	1.0E-26	[1..161]	[1..161]
EG11872 - inhibitor of the cpx response; periplasmic adaptor protein / Inhibitor of the cpx response; periplas... gi\|161367475 - gi\|161367475\|ref\|NP_290543.2\| periplasmic repressor CpxP [Escherichia coli O157:H7 EDL933] gi\|188487283, gi... - gi\|188492084\|ref\|ZP_02999354.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848728... gi\|170083384, gi... - gi\|170083384\|ref\|YP_001732704.1\| periplasmic protein combats stress [Escherichia coli str. K-12 subs... gi\|195937555 - gi\|195937555\|ref\|ZP_03082937.1\| periplasmic repressor CpxP [Escherichia coli O157:H7 str. EC4024] gi\|193063997, gi... - gi\|193063997\|ref\|ZP_03045083.1\| periplasmic protein CpxP [Escherichia coli E22], gi\|192929462\|gb\|EDV... CPXP_SHIFL - Periplasmic protein CpxP OS=Shigella flexneri GN=cpxP PE=3 SV=1 gi\|209397775, gi... - gi\|209397775\|ref\|YP_002273431.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4115], gi... EG11872 - inhibitor of the cpx response; periplasmic adaptor protein / Inhibitor of the cpx response; periplas... gi\|208741696, gi... - gi\|208821573\|ref\|ZP_03261893.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|215267317, gi... - gi\|215489245\|ref\|YP_002331676.1\| periplasmic repressor CpxP [Escherichia coli O127:H6 str. E2348/69]... gi\|209921393, gi... - gi\|209921393\|ref\|YP_002295477.1\| periplasmic repressor CpxP [Escherichia coli SE11], gi\|209914652\|db... CPXP_ECOL6 - Periplasmic protein CpxP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cpxP PE=3... gi\|161485828 - gi\|161485828\|ref\|NP_709719.3\| periplasmic repressor CpxP [Shigella flexneri 2a str. 301] gi\|161950015 - gi\|161950015\|ref\|YP_405268.2\| periplasmic repressor CpxP [Shigella dysenteriae Sd197] gi\|161486410 - gi\|161486410\|ref\|NP_838963.2\| periplasmic repressor CpxP [Shigella flexneri 2a str. 2457T] gi\|161986403 - gi\|161986403\|ref\|YP_312833.2\| periplasmic repressor CpxP [Shigella sonnei Ss046] gi\|161984811 - gi\|161984811\|ref\|YP_410210.2\| periplasmic repressor CpxP [Shigella boydii Sb227] gi\|169757003, gi... - gi\|170022075\|ref\|YP_001727029.1\| periplasmic repressor CpxP [Escherichia coli ATCC 8739], gi\|1697570... gi\|162139737 - gi\|162139737\|ref\|NP_312866.2\| periplasmic repressor CpxP [Escherichia coli O157:H7 str. Sakai] gi\|218429762, gi... - gi\|218692198\|ref\|YP_002400410.1\| periplasmic repressor CpxP [Escherichia coli ED1a], gi\|218429762\|em... gi\|218363245, gi... - gi\|218556476\|ref\|YP_002389390.1\| periplasmic repressor CpxP [Escherichia coli IAI1], gi\|218363245\|em... CPXP_ECOL6 - Periplasmic protein CpxP OS=Escherichia coli O6 GN=cpxP PE=3 SV=1 gi\|218701383, gi... - gi\|218701383\|ref\|YP_002409012.1\| periplasmic repressor CpxP [Escherichia coli IAI39], gi\|218371369\|e... gi\|89110115, gi\|... - gi\|89110115\|ref\|AP_003895.1\| periplasmic protein combats stress [Escherichia coli str. K-12 substr. ... gi\|218354360, gi... - gi\|218697628\|ref\|YP_002405295.1\| periplasmic repressor CpxP [Escherichia coli 55989], gi\|218354360\|e... gi\|75238357 - gi\|75238357\|ref\|ZP_00722356.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75230435 - gi\|75230435\|ref\|ZP_00716921.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|218434635, gi... - gi\|218707538\|ref\|YP_002415057.1\| periplasmic repressor CpxP [Escherichia coli UMN026], gi\|218434635\|... gi\|75197786, gi\|... - gi\|75197786\|ref\|ZP_00707856.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75188649, gi\|... - gi\|75188649\|ref\|ZP_00701916.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110807396, gi... - gi\|110807396\|ref\|YP_690916.1\| periplasmic repressor CpxP [Shigella flexneri 5 str. 8401], gi\|1106169... gi\|238862008, gi... - gi\|238902980\|ref\|YP_002928776.1\| periplasmic protein combats stress [Escherichia coli BW2952], gi\|23... CPXP_ECOLI - Periplasmic protein cpxP precursor - Escherichia coli gi\|254595313, gi... - gi\|254795913\|ref\|YP_003080750.1\| periplasmic protein combats stress [Escherichia coli O157:H7 str. T... gi\|124501277, gi... - gi\|124527575\|ref\|ZP_01699040.1\| protein of unknown function, Spy-related [Escherichia coli B], gi\|12...	2.0E-25	[1..157]	[1..151]
gi\|226902882, gi... - gi\|237702945\|ref\|ZP_04533426.1\| periplasmic repressor CpxP [Escherichia sp. 3_2_53FAA], gi\|226902882... gi\|91213454, gi\|... - gi\|91213454\|ref\|YP_543440.1\| hypothetical protein UTI89_C4497 [Escherichia coli UTI89], gi\|91075028\|... gi\|115515305, gi... - gi\|117626181\|ref\|YP_859504.1\| periplasmic repressor CpxP [Escherichia coli APEC O1], gi\|115515305\|gb...	2.0E-25	[1..157]	[2..152]
gi\|83569820 - gi\|83569820\|ref\|ZP_00921269.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	3.0E-25	[1..156]	[2..151]
gi\|217322373, gi... - gi\|217326152\|ref\|ZP_03442236.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. TW14588], gi... gi\|254039130, gi... - gi\|254039130\|ref\|ZP_04873180.1\| periplasmic protein CpxP [Escherichia sp. 1_1_43], gi\|226838566\|gb\|E... gi\|227837722, gi... - gi\|227885346\|ref\|ZP_04003151.1\| periplasmic protein CpxP [Escherichia coli 83972], gi\|227837722\|gb\|E... gi\|189010231, gi... - gi\|189010231\|ref\|ZP_02805835.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|189403092, gi... - gi\|189403092\|ref\|ZP_02793220.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189404026, gi... - gi\|189404026\|ref\|ZP_02786713.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189373441, gi... - gi\|189404886\|ref\|ZP_02811774.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|191166404, gi... - gi\|191166404\|ref\|ZP_03028235.1\| periplasmic protein CpxP [Escherichia coli B7A], gi\|190903504\|gb\|EDV... gi\|192958584, gi... - gi\|193067964\|ref\|ZP_03048929.1\| periplasmic protein CpxP [Escherichia coli E110019], gi\|192958584\|gb... gi\|208808100, gi... - gi\|208808100\|ref\|ZP_03250437.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|208813683, gi... - gi\|208813683\|ref\|ZP_03255012.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|15804503, gi\|... - gi\|15804503\|ref\|NP_290543.1\| hypothetical protein Z5458 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364315, gi\|... - gi\|15834093\|ref\|NP_312866.1\| hypothetical protein ECs4839 [Escherichia coli O157:H7], gi\|13364315\|db... gi\|26250679, gi\|... - gi\|26250679\|ref\|NP_756719.1\| hypothetical protein c4865 [Escherichia coli CFT073], gi\|26111110\|gb\|AA... gi\|24115209, gi\|... - ref\|NP_709719.1\| yiiO gene product [Shigella flexneri 2a str. 301], gb\|AAN45426.1\| yiiO gene produc... gi\|209752420, gi... - gi\|305017\|gb\|AAB03046.1\| ORF_o167 [Escherichia coli], pir\|\|G91233 hypothetical protein ECs4839 [impo... gi\|74314414, gi\|... - gi\|74314414\|ref\|YP_312833.1\| Uncharacterized periplasmic protein [Shigella sonnei Ss046], gi\|7385789... gi\|81243067, gi\|... - gi\|82778919\|ref\|YP_405268.1\| Uncharacterized periplasmic protein [Shigella dysenteriae Sd197], gi\|81... gi\|75258103 - gi\|75258103\|ref\|ZP_00729564.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75513936 - gi\|75513936\|ref\|ZP_00736289.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|81247674, gi\|... - gi\|82546263\|ref\|YP_410210.1\| Uncharacterized periplasmic protein [Shigella boydii Sb227], gi\|8124767... gi\|13364315, gi\|... - gi\|15834093\|ref\|NP_312866.1\| hypothetical protein ECs4839 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|194414516, gi... - gi\|75211272\|ref\|ZP_00711371.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|168748792, gi... - gi\|188016777\|gb\|EDU54899.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|305017\|gb\|AAB... - ORF_o167 [Escherichia coli] gi\|189357120, gi... - gi\|189357120\|gb\|EDU75539.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|187769156, gi... - gi\|187769156\|gb\|EDU33000.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189378067, gi... - gi\|189378067\|gb\|EDU96483.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|170682865, gi... - gi\|170682865\|ref\|YP_001746251.1\| periplasmic protein CpxP [Escherichia coli SMS-3-5], gi\|170520583\|g...	4.0E-25	[1..157]	[2..152]
gi\|83586242, gi\|... - gi\|83586242\|ref\|ZP_00924878.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	4.0E-25	[1..157]	[2..152]
gi\|75240307 - gi\|75240307\|ref\|ZP_00724247.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110345842, gi... - gi\|110644250\|ref\|YP_671980.1\| periplasmic repressor CpxP [Escherichia coli 536], gi\|110345842\|gb\|ABG...	4.0E-25	[1..157]	[1..151]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKVTTLVMA SMFVLGSSAA FAADNTKVTE GYHGDGKMMM NKKGDRGHHN MFDGINLTEQ  60
   61 QRQQMRDLMR QSHQSQPRLD LEDREAMHKL ITADKFDEAA VRAQAEKMSQ NQIERHVEMA 120
  121 KVRNQMYNLL TPEQKEALNK KHQERIEKLQ QKPAAQPSSA QK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.963
Match:	1s5lU
Description:	Architecture of the photosynthetic oxygen evolving center
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits