YRC Public Data Repository - Protein Structure Prediction

Protein:	CKS1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKS1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|1310783, gi\|1... - gi\|1310785\|pdb\|1SCE\|D Chain D, Crystal Structure Of The Cell Cycle Regulatory Protein Suc1 Reveals A...	187.0	[0..1]	[113..1]
CKS1_YEAST - Cyclin-dependent kinases regulatory subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... CKS1 - Cyclin-dependent protein kinase regulatory subunit and adaptor; modulates proteolysis of M-phase tar... gi\|151946525 - gi\|151946525\|gb\|EDN64747.1\| cyclin-dependent protein kinase subunit [Saccharomyces cerevisiae YJM789...	175.0	[0..8]	[107..11]
gi\|42551432, gi\|... - gi\|46120526\|ref\|XP_385086.1\| hypothetical protein FG04910.1 [Gibberella zeae PH-1], gi\|42551432\|gb\|E...	174.0	[0..3]	[97..10]
gi\|44980997, gi\|... - gi\|45185339\|ref\|NP_983056.1\| ABR109Cp [Ashbya gossypii ATCC 10895], gi\|44980997\|gb\|AAS50880.1\| ABR10... gi\|44980997 - gi\|44980997\|gb\|AAS50880.1\| ABR109Cp [Ashbya gossypii ATCC 10895]	173.0	[0..8]	[113..10]
gi\|49642039, gi\|... - gi\|50305891\|ref\|XP_452906.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642039\|emb\|CAH0175... gi\|49642039 - gi\|49642039\|emb\|CAH01757.1\| KLLA0C15807p [Kluyveromyces lactis]	173.0	[0..8]	[106..10]
gi\|68491075, gi\|... - gi\|68491075\|ref\|XP_710654.1\| hypothetical protein CaO19.8869 [Candida albicans SC5314], gi\|68491056\|... orf19.1282, orf1... - orf19.1282 CGDID:CAL0003060 Assembly 19, Contig19-10105 (7220, 7528) CDS, translated using codon tab... gi\|238882788 - gi\|238882788\|gb\|EEQ46426.1\| cyclin-dependent kinases regulatory subunit [Candida albicans WO-1]	170.0	[0..7]	[102..4]
gi\|49139562, gi\|... - gi\|75858932\|ref\|XP_868806.1\| hypothetical protein AN9424.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	170.0	[0..3]	[97..8]
gi\|49655949, gi\|... - gi\|50423397\|ref\|XP_460281.1\| hypothetical protein DEHA0E23903g [Debaryomyces hansenii CBS767], gi\|49... gi\|49655949\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767]	169.0	[0..7]	[105..4]
gi\|85113917 - gi\|85113917\|ref\|XP_964606.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32417582, gi\|... - gi\|32417582\|ref\|XP_329269.1\| hypothetical protein [Neurospora crassa], gi\|28926394\|gb\|EAA35370.1\| hy...	168.0	[0..3]	[98..13]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSGVPRLL TASERERLEP FIDQIHYSPR YADDEYEYRH VMLPKAMLKA IPTDYFNPET  60
   61 GTLRILQEEE WRGLGITQSL GWEMYEVHVP EPHILLFKRE KDYQMKFSQQ RGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.30103
Match:	1sceA
Description:	suc1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits