YRC Public Data Repository - Protein Structure Prediction

Protein:	SYN_SHIF8
Organism:	Shigella flexneri 5 str. 8401
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYN_SHIF8.

Description	E-value	Query Range	Subject Range
SYN_SALTI - Asparagine--tRNA ligase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|29142358, gi\|... - gi\|29142358\|ref\|NP_805700.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALTI - Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|16759869 - gi\|16759869\|ref\|NP_455486.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=asnS PE=3 SV=1 SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1 gi\|213581037 - gi\|213581037\|ref\|ZP_03362863.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213612501 - gi\|213612501\|ref\|ZP_03370327.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213999484 - gi\|213999484\|ref\|ZP_03410219.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|238913227 - gi\|238913227\|ref\|ZP_04657064.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205271988, gi... - gi\|205352207\|ref\|YP_002226008.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|206708194, gi... - gi\|207856391\|ref\|YP_002243042.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213162084 - gi\|213162084\|ref\|ZP_03347794.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213424614 - gi\|213424614\|ref\|ZP_03357397.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|194470581, gi... - gi\|194470581\|ref\|ZP_03076565.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... gi\|194710132, gi... - gi\|194734630\|ref\|YP_002114055.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|197094351, gi... - gi\|197362874\|ref\|YP_002142511.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|197937846, gi... - gi\|198243330\|ref\|YP_002214926.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205332405, gi... - gi\|205332405\|gb\|EDZ19169.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|168237106, gi... - gi\|197289886\|gb\|EDY29247.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|195631055, gi... - gi\|195631055\|gb\|EDX49641.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205341479, gi... - gi\|205341479\|gb\|EDZ28243.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	496.0	[0..1]	[466..1]
gi\|194450065, gi... - gi\|194450065\|ref\|YP_002044994.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|197249609, gi... - gi\|197249609\|ref\|YP_002145920.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=asnS PE=3... gi\|200390273, gi... - gi\|200390273\|ref\|ZP_03216884.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... SYN_SALTY - Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|167993358, gi... - gi\|205328543\|gb\|EDZ15307.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=asnS] [protein=asparaginyl-tRNA synthetase] [protein_id=YP_005236722.1] [location=complement(1... gi\|205337229, gi... - gi\|205337229\|gb\|EDZ23993.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205346905, gi... - gi\|205346905\|gb\|EDZ33536.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|194443471, gi... - gi\|194443471\|ref\|YP_002040200.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|167552996, gi... - gi\|205322466\|gb\|EDZ10305.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	495.0	[0..1]	[466..1]
SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=asnS PE=3 SV=1 SYN_SALCH - Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1 gi\|224582810, gi... - gi\|224582810\|ref\|YP_002636608.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1	495.0	[0..1]	[466..1]
SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1 SYN_YERP3 - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 ... SYN_YERPE - Asparagine--tRNA ligase OS=Yersinia pestis GN=asnS PE=3 SV=1 SYN_YERPA - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1 SYN_YERPN - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1 gi\|21959647, gi\|... - gi\|22126636\|ref\|NP_670059.1\| asparaginyl-tRNA synthetase [Yersinia pestis KIM], gi\|21959647\|gb\|AAM86... SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=asnS PE=3 SV=1 gi\|45441008, gi\|... - gi\|45441008\|ref\|NP_992547.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001... gi\|149366669, gi... - gi\|149366669\|ref\|ZP_01888703.1\| asparaginyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|14929104... gi\|15979461, gi\|... - gi\|218928560\|ref\|YP_002346435.1\| asparaginyl-tRNA synthetase [Yersinia pestis CO92], gi\|16121692\|ref... SYN_YERPP - Asparagine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1 gi\|229841386, gi... - gi\|229841386\|ref\|ZP_04461545.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|229843491, gi... - gi\|229843491\|ref\|ZP_04463637.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|165938931, gi... - gi\|165938931\|ref\|ZP_02227484.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|162419705, gi... - gi\|77636026\|ref\|ZP_00798104.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis Angol... gi\|165924584, gi... - gi\|165924584\|ref\|ZP_02220416.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|167050713, gi... - gi\|167400005\|ref\|ZP_02305523.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG0... gi\|166207346, gi... - gi\|166211575\|ref\|ZP_02237610.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42... gi\|167057132, gi... - gi\|167424283\|ref\|ZP_02316036.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.... gi\|166962464, gi... - gi\|167419723\|ref\|ZP_02311476.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|186697881, gi... - gi\|186894855\|ref\|YP_001871967.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], gi... gi\|169751407, gi... - gi\|170024873\|ref\|YP_001721378.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], gi...	495.0	[0..1]	[466..1]
gi\|238722626, gi... - gi\|77974872\|ref\|ZP_00830410.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia frederikseni...	494.0	[0..1]	[466..1]
gi\|77956525 - gi\|77956525\|ref\|ZP_00820617.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia bercovieri A... gi\|238795874, gi... - gi\|77963114\|ref\|ZP_00826927.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia mollaretii A...	494.0	[0..1]	[466..1]
gi\|83569156, gi\|... - gi\|83569156\|ref\|ZP_00920615.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Shigella dysenteriae ...	493.0	[0..1]	[466..1]
gi\|238728303, gi... - gi\|77979213\|ref\|ZP_00834633.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia intermedia A...	492.0	[0..1]	[466..1]
gi\|13360472, gi\|... - gi\|15830267\|ref\|NP_309040.1\| asparaginyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1... SYN_ECO57 - Asparagine--tRNA ligase OS=Escherichia coli O157:H7 GN=asnS PE=3 SV=2 gi\|25293009, gi\|... - pir\|\|C85619 asparagine tRNA synthetase [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800791, gi\|... - gi\|15800791\|ref\|NP_286805.1\| asparaginyl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12514... gi\|209158426, gi... - gi\|209397026\|ref\|YP_002269602.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4115], ... gi\|217325811, gi... - gi\|217325811\|ref\|ZP_03441895.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. TW14588], ... gi\|168787362, gi... - gi\|189372735\|gb\|EDU91151.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|195939655 - gi\|195939655\|ref\|ZP_03085037.1\| asparaginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|208815310, gi... - gi\|208815310\|ref\|ZP_03256489.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4045], g... gi\|254591530, gi... - gi\|254792130\|ref\|YP_003076967.1\| asparaginyl tRNA synthetase [Escherichia coli O157:H7 str. TW14359]... gi\|208738133, gi... - gi\|208822648\|ref\|ZP_03262967.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4042], g... gi\|168762930, gi... - gi\|189366782\|gb\|EDU85198.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|168769928, gi... - gi\|189361160\|gb\|EDU79579.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|168776214, gi... - gi\|187768340\|gb\|EDU32184.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168783976, gi... - gi\|188998770\|gb\|EDU67756.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|188014709, gi... - gi\|188014709\|gb\|EDU52831.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|189355907, gi... - gi\|189355907\|gb\|EDU74326.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4401], gi\|16...	492.0	[0..1]	[466..1]
gi\|89104665 - gi\|89104665\|ref\|ZP_01177202.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis biova...	492.0	[0..1]	[466..1]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVPVADVL QGRVAVDSEV TVRGWVRTRR DSKAGISFLA VYDGSCFDPV QAVINNSLPN  60
   61 YNEDVLRLTT GCSVIVTGKV VASPGQGQQF EIQASKVEVA GWVEDPDTYP MAAKRHSIEY 120
  121 LREVAHLRPR TNLIGAVARV RHTLAQALHR FFNEQGFFWV STPLITASDT EGAGEMFRVS 180
  181 TLDLENLPRN DQGKVDFDKD FFGKESFLTV SGQLNGETYA CALSKIYTFG PTFRAENSNT 240
  241 SRHLAEFWML EPEVAFANLN DIAGLAEAML KYVFKAVLEE RADDMKFFAE RVDKDAVSRL 300
  301 ERFIEADFAQ VDYTDAVTIL ENCGRKFENP VYWGVDLSSE HERYLAEEHF KAPVVVKNYP 360
  361 KDIKAFYMRL NEDGKTVAAM DVLAPGIGEI IGGSQREERL DVLDERMLEM GLNKEDYWWY 420
  421 RDLRRYGTVP HSGFGLGFER LIAYVTGVQN VRDVIPFPRT PRNASF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits