YRC Public Data Repository - Protein Structure Prediction

Protein:	SPR2H_MOUSE
Organism:	Mus musculus
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR2H_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|116095803, gi... - gi\|116630221\|ref\|YP_815393.1\| hypothetical protein LGAS_1663 [Lactobacillus gasseri ATCC 33323], gi\|...	129.0	[0..4]	[107..2208]
gi\|28379477, gi\|... - gi\|28379477\|ref\|NP_786369.1\| cell surface protein precursor [Lactobacillus plantarum WCFS1], gi\|2827...	106.0	[0..18]	[105..1170]
gi\|42519684, gi\|... - gi\|42519684\|ref\|NP_965614.1\| hypothetical protein LJ0641 [Lactobacillus johnsonii NCC 533], gi\|41583...	97.0	[0..3]	[107..1347]
gi\|546643 - gi\|546643\|gb\|AAB30711.1\| SpaA [Streptococcus sobrinus]	95.0	[0..1]	[105..829]
gi\|62006019 - gi\|62006019\|dbj\|BAD91216.1\| antigen I/II [Streptococcus downei]	95.0	[0..1]	[105..828]
SSP5_STRGN - Agglutinin receptor OS=Streptococcus gordonii GN=ssp5 PE=1 SV=2	92.0	[0..2]	[106..767]
gi\|227947 - gi\|227947\|prf\|\|1714184A cell surface antigen	91.0	[0..2]	[99..841]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQQQQCKQ PCQPPPVCPP PQCPEPCPPP KCPEPCPPPK CTEPCPPPKC PEPCPPPKCP  60
   61 EPCPPPKCPE PCPPPKCTEP CPPPSYQQKC PSVQPSPPCQ QKCPPKNK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.67
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits