YRC Public Data Repository - Protein Structure Prediction

Protein:	MT3_MOUSE
Organism:	Mus musculus
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT3_MOUSE.

Description	E-value	Query Range	Subject Range
MT3_SHEEP - Metallothionein-3 OS=Ovis aries GN=MT3 PE=3 SV=1	73.0	[0..1]	[68..1]
MT3_BOSMU - Metallothionein-3 OS=Bos mutus grunniens GN=MT3 PE=3 SV=1 MT3_BOVIN - Metallothionein-3 OS=Bos taurus GN=MT3 PE=1 SV=2	71.0	[0..1]	[68..1]
gi\|73950365 - gi\|73950365\|ref\|XP_868116.1\| PREDICTED: hypothetical protein XP_863023 [Canis familiaris]	64.0	[0..1]	[68..1]
gi\|114662652 - gi\|114662652\|ref\|XP_001139417.1\| PREDICTED: similar to neuron growth inhibitory factor [Pan troglody... gi\|123981698, gi... - gi\|61360768\|gb\|AAX41923.1\| metallothionein 3 [synthetic construct], gi\|61360764\|gb\|AAX41922.1\| metal... MT3 - metallothionein 3	60.0	[0..1]	[68..1]
gi\|61370508, gi\|... - gi\|61370513\|gb\|AAX43508.1\| metallothionein 3 [synthetic construct], gi\|61370508\|gb\|AAX43507.1\| metal...	60.0	[0..1]	[68..1]
gi\|802154, gi\|10... - gi\|802154\|gb\|AAB32777.1\| metallothionein; MT [Carassius auratus], pir\|\|JC2419 metallothionein - gold...	60.0	[0..6]	[53..4]
gi\|109128677 - gi\|109128677\|ref\|XP_001097779.1\| PREDICTED: hypothetical protein [Macaca mulatta]	60.0	[0..6]	[67..167]
MT1_COLLI - Metallothionein-1 OS=Columba livia PE=1 SV=1	59.0	[0..1]	[68..1]
MT3_RABIT - Metallothionein-3 OS=Oryctolagus cuniculus GN=MT3 PE=3 SV=1	59.0	[0..1]	[68..1]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPETCPCPT GGSCTCSDKC KCKGCKCTNC KKSCCSCCPA GCEKCAKDCV CKGEEGAKAE  60
   61 AEKCSCCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	4mt2A
Description:	COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits