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View Structure Prediction Details

Protein: AAKB1_MOUSE
Organism: Mus musculus
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAKB1_MOUSE.

Description E-value Query
Range		 Subject
Range
gi|2230863, gi|7... - pir||T09514 5'-AMP-activated protein kinase (EC 2.7.1.-) beta-1 chain - human, gi|2230863|emb|CAA73...
 372.0 [0..1] [270..1]
AAKB1_PONAB - 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3
AAKB1_PONPY - 5'-AMP-activated protein kinase subunit beta-1 - Pongo pygmaeus (Orangutan)
 371.0 [0..1] [270..1]
gi|73995299 - gi|73995299|ref|XP_543421.2| PREDICTED: similar to 5-AMP-activated protein kinase, beta-1 subunit (A...
tr|M3VVN1|M3VVN1... - Protein kinase AMP-activated non-catalytic subunit beta 1 OS=Felis catus GN=PRKAB1 PE=4 SV=1
 366.0 [0..1] [270..1]
AAKB1_BOVIN - 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3
 364.0 [0..1] [270..1]
AAKB1_RAT - 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4
 362.0 [0..1] [270..1]

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Predicted Domain #1
Region A:
Residues: [1-171] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTSSERAA LERQAGHKTP RRDSSGGAKD GDRPKILMDS PEDADIFHSE EIKAPEKEEF  60
   61 LAWQHDLEAN DKAPAQARPT VFRWTGGGKE VYLSGSFNNW SKLPLTRSQN NFVAILDLPE 120
  121 GEHQYKFFVD GQWTHDPSEP IVTSQLGTVN NIIQVKKTDF EVFDALMVDS Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1z0nA
Description: the glycogen-binding domain of the AMP-activated protein kinase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [172-270] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCSDVSELSS SPPGPYHQEP YMSKPEERFK APPILPPHLL QVILNKDTGI SCDPALLPEP  60
   61 NHVMLNHLYA LSIKDGVMVL SATHRYKKKY VTTLLYKPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.30103
Match: 2v8qB
Description: No description for 2v8qB was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle