YRC Public Data Repository - Protein Structure Prediction

Protein:	CXB6_MOUSE
Organism:	Mus musculus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CXB6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|4127986 - gi\|4127986\|emb\|CAA06611.1\| unnamed protein product [Homo sapiens]	392.0	[0..1]	[261..1]
gi\|46242702 - gi\|46242702\|gb\|AAS83427.1\| connexin30 [Mesocricetus auratus] gi\|45439430 - gi\|45439430\|gb\|AAP37452.3\| gap junction protein connexin 30 [Cricetulus griseus]	392.0	[0..1]	[261..1]
gi\|60654495 - gi\|60654495\|gb\|AAX29938.1\| gap junction protein beta 6 [synthetic construct]	391.0	[0..1]	[261..1]
gi\|74145020 - gi\|74145020\|dbj\|BAE22212.1\| unnamed protein product [Mus musculus]	390.0	[0..1]	[261..1]
gi\|5758953, gi\|1... - gi\|5758953\|gb\|AAD50911.1\|AF170284_1 connexin 30 [Rattus norvegicus], gi\|17865329\|ref\|NP_445840.1\| ga...	387.0	[0..1]	[261..1]
CXB6_CHICK - Gap junction beta-6 protein OS=Gallus gallus GN=GJB6 PE=2 SV=1	384.0	[0..1]	[261..1]
CXB6_BOVIN - Gap junction beta-6 protein OS=Bos taurus GN=GJB6 PE=2 SV=1	381.0	[0..1]	[261..1]
CXA3_SHEEP - Gap junction alpha-3 protein OS=Ovis aries GN=GJA3 PE=2 SV=3	367.0	[0..2]	[260..3]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGTLHTVI GGVNKHSTSI GKVWITVIFI FRVMILVVAA QEVWGDEQED FVCNTLQPGC  60
   61 KNVCYDHFFP VSHIRLWALQ LIFVSTPALL VAMHVAYYRH ETARKFIRGE KRNEFKDLED 120
  121 IKRQKVRIEG SL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.443697
Match:	PF00029.10
Description:	No description for PF00029.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WWTYTSSIFF RIIFEAAFMY VFYFLYNGYH LPWVLKCGID PCPNLVDCFI SRPTEKTVFT  60
   61 VFMISASVIC MLLNVAELCY LLLKLCFRRS KRTQAQRNHP NHALKESKQN EMNELISDSG 120
  121 QNAITSFPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits