YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51094499, gi\|...
Organism:	Homo sapiens
Length:	666 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51094499, gi|....

Description	E-value	Query Range	Subject Range
CAMK2B - calcium/calmodulin-dependent protein kinase (CaM kinase) II beta	0.0	[1..666]	[1..664]
gi\|148708624, gi... - gi\|56207101\|emb\|CAI25261.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	0.0	[1..666]	[1..666]
gi\|109066776 - gi\|109066776\|ref\|XP_001095396.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase I...	0.0	[23..666]	[367..1012]
gi\|73953001 - gi\|73953001\|ref\|XP_863421.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	0.0	[1..666]	[1..650]
gi\|108796663 - gi\|108796663\|ref\|NP_001035813.1\| calcium/calmodulin-dependent protein kinase II beta isoform 1 [Ratt... gi\|56207096, gi\|... - gi\|56207096\|emb\|CAI25256.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	0.0	[1..666]	[1..589]
gi\|10443740 - gi\|10443740\|gb\|AAG17558.1\|AF233633_1 calcium/calmodulin-dependent protein kinase II gamma M subunit ...	0.0	[1..666]	[1..643]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTCTRF TDEYQLYEDI GKGAFSVVRR CVKLCTGHEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH SNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIQQI 120
  121 LEAVLHCHQM GVVHRDLKPE NLLLASKCKG AAVKLADFGL AIEVQGDQQA WFGFAGTPGY 180
  181 LSPEVLRKEA YGKPVDIWAC GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKNLIN QMLTINPAKR ITAHEALKHP WVCQRSTVAS MMHRQETVEC LKKFNARRKL 300
  301 KGAILTTMLA TRNFSVGRQT TAPATMSTAA SGTTMGLVEQ AKSLLNKKAD GVKPQTNSTK 360
  361 NSAAATSPKG TL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.30103
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [373-519]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPAALEPQTT VIHNPVDGIK ESSDSANTTI EDEDAKAPRV PDILSSVRRG SGAPEAEGPL  60
   61 PCPSPAPFSP LPAPSPRISD ILNSVRRGSG TPEAEGPLSA GPPPCLSPAL LGPLSSPSPR 120
  121 ISDILNSVRR GSGTPEAEGP SPVGPPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [520-666]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPSPTIPGPL PTPSRKQEII KTTEQLIEAV NNGDFEAYAK ICDPGLTSFE PEALGNLVEG  60
   61 MDFHRFYFEN LLAKNSKPIH TTILNPHVHV IGEDAACIAY IRLTQYIDGQ GRPRTSQSEE 120
  121 TRVWHRRDGK WQNVHFHCSG APVAPLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits