YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|113548269, gi...
Organism: Oryza sativa Japonica Group
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113548269, gi....

Description E-value Query
Range
Subject
Range
TBL3_ARATH - Protein trichome birefringence-like 3 OS=Arabidopsis thaliana GN=TBL3 PE=2 SV=1
514.0 [0..4] [442..5]

Back

Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQLPAMKRV KGRAPLSVVV AIIGGLALAG IIFTEDLRGL TEVKEKVTDK EKKRTSLRTV  60
   61 MRTSALLSAD QPPPPAVLSV EPATATPPPA PKMA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNATRCSVTD GYWAYDRSKK LPYTDQTCPY VDRQDSCQRN GRPDSDYLYW DWHLDDCLLP  60
   61 RFDPVSMLEK LRGKRIMFVG DSLQLGQWLS FVCLVNSAVP DTPGAKSMER SRTLSVYTVK 120
  121 EYNASIEFYW APFLVES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [232-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSDRNIALGA GGRVLHVDAI EEHGKHWRRA DILVFDSYVW WMTGYRIKSV WGSFGDDGYE  60
   61 ELDAWVAYRL GLKTWANWVD SNVDPATTRV FFMSISTTHM RSEDWGREGG IRCYNETWPI 120
  121 TQRGYRGSGS DRRMMEVMSD VLGRMRTPVT LLNITQLTEH RVDAHVSVYT ETGGLLVTDE 180
  181 EKTDPQRYTD CIHWCIPGVP DTWNRLLYAH L

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 62.207608
Match: PF03005.6
Description: No description for PF03005.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle