YRC Public Data Repository - Protein Structure Prediction

Protein:	CBX5
Organism:	Homo sapiens
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBX5.

Description	E-value	Query Range	Subject Range
gi\|109067205 - gi\|109067205\|ref\|XP_001095397.1\| PREDICTED: similar to chromobox homolog 3 [Macaca mulatta]	7.0E-53	[1..181]	[270..440]
gi\|114666540 - gi\|114666540\|ref\|XP_523820.2\| PREDICTED: similar to heterochromatin protein 1 beta [Pan troglodytes]	2.0E-44	[26..180]	[191..344]
gi\|109488886 - gi\|109488886\|ref\|XP_340886.3\| PREDICTED: similar to Chromobox protein homolog 1 (Heterochromatin pro...	4.0E-42	[26..180]	[591..740]
gi\|73976140 - gi\|73976140\|ref\|XP_539136.2\| PREDICTED: similar to chromobox homolog 3 isoform 1 [Canis familiaris]	3.0E-40	[1..181]	[11..202]
gi\|76645259 - gi\|76645259\|ref\|XP_873631.1\| PREDICTED: similar to Chromobox protein homolog 1 (Heterochromatin prot...	4.0E-40	[26..180]	[127..276]
gi\|7416937 - gi\|7416937\|gb\|AAF62370.1\|AF136630_1 heterochromatin-like protein 1 [Homo sapiens]	4.0E-40	[1..181]	[11..181]
gi\|83699408, gi\|... - gi\|83699408\|ref\|NP_031650.2\| chromobox homolog 3 (Drosophila HP1 gamma) [Mus musculus], gi\|80474659\|...	5.0E-40	[1..181]	[11..181]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKTKRTAD SSSSEDEEEY VVEKVLDRRV VKGQVEYLLK WKGFSEEHNT WEPEKNLDCP  60
   61 ELISEFMKKY KKMKEGENNK PREKSESNKR KSNFSNSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	2d9uA
Description:	No description for 2d9uA was found.

Predicted Domain #2

Region A:
Residues: [99-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDIKSKKKRE QSNDIARGFE RGLEPEKIIG ATDSCGDLMF LMKWKDTDEA DLVLAKEANV  60
   61 KCPQIVIAFY EERLTWHAYP EDAENKEKET AKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2fmmA
Description:	No description for 2fmmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits