YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54697070, gi\|...
Organism:	Homo sapiens
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54697070, gi|....

Description	E-value	Query Range	Subject Range
gi\|50756309 - gi\|50756309\|ref\|XP_415105.1\| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]	0.0	[1..228]	[171..398]
gi\|113423966 - gi\|113423966\|ref\|XP_001132949.1\| PREDICTED: similar to Ubiquitin-63E CG11624-PA, isoform A [Homo sap...	0.0	[1..228]	[162..389]
gi\|114647760 - gi\|114647760\|ref\|XP_001136911.1\| PREDICTED: hypothetical protein [Pan troglodytes]	0.0	[1..228]	[148..375]
gi\|118370588 - gi\|118370588\|ref\|XP_001018495.1\| Ubiquitin family protein [Tetrahymena thermophila] gi\|89300262, gi\|... - gi\|89300262\|gb\|EAR98250.1\| Ubiquitin family protein [Tetrahymena thermophila SB210], gi\|118370588\|re...	0.0	[1..228]	[627..854]
gi\|7488781, gi\|1... - pir\|\|T12035 polyubiquitin 4.4 - kidney bean, gi\|1684855\|gb\|AAB36545.1\| ubiquitin-like protein [Phase...	0.0	[1..228]	[103..330]
gi\|109497145, gi... - gi\|149063234\|gb\|EDM13557.1\| rCG21222, isoform CRA_a [Rattus norvegicus], gi\|149063232\|gb\|EDM13555.1\|...	0.0	[1..228]	[1..228]
UBB_SHEEP - Polyubiquitin-B OS=Ovis aries GN=UBB PE=2 SV=1	0.0	[1..229]	[77..305]
gi\|94375387, gi\|... - gi\|94375387\|ref\|XP_001001988.1\| PREDICTED: similar to ubiquitin C isoform 4 [Mus musculus], gi\|74214...	0.0	[1..228]	[1..228]
gi\|61369554 - gi\|61369554\|gb\|AAX43350.1\| ubiquitin B [synthetic construct]	0.0	[1..229]	[1..229]
UBB_BOVIN - Polyubiquitin-B OS=Bos taurus GN=UBB PE=1 SV=1 gi\|197129068, gi... - gi\|197129068\|gb\|ACH45566.1\| putative ubiquitin C variant 14 [Taeniopygia guttata], gi\|197129064\|gb\|A...	0.0	[1..229]	[77..305]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRLRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	2ojrA
Description:	No description for 2ojrA was found.

Predicted Domain #2

Region A:
Residues: [76-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMQIFVKTLT GKTITLEVEP SDTIENVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLSDY  60
   61 NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVEPSDTI ENVKAKIQDK EGIPPDQQRL 120
  121 IFAGKQLEDG RTLSDYNIQK ESTLHLVLRL RGGC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	1z2mA
Description:	Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits