YRC Public Data Repository - Protein Structure Prediction

Protein:	C7orf50
Organism:	Homo sapiens
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C7orf50.

Description	E-value	Query Range	Subject Range
gi\|114625411 - gi\|114625411\|ref\|XP_001140845.1\| PREDICTED: similar to MGC11257 protein isoform 2 [Pan troglodytes]	3.0E-54	[1..194]	[1..194]
gi\|90075580 - gi\|90075580\|dbj\|BAE87470.1\| unnamed protein product [Macaca fascicularis] gi\|109065808 - gi\|109065808\|ref\|XP_001085006.1\| PREDICTED: hypothetical protein [Macaca mulatta]	3.0E-51	[1..194]	[1..194]
gi\|21312132, gi\|... - gi\|21312132\|ref\|NP_082745.1\| hypothetical protein LOC73212 [Mus musculus], gi\|12852007\|dbj\|BAB29235....	2.0E-43	[1..172]	[1..171]
gi\|42547256, gi\|... - gi\|46137481\|ref\|XP_390432.1\| hypothetical protein FG10256.1 [Gibberella zeae PH-1], gi\|42547256\|gb\|E...	8.0E-42	[3..180]	[16..183]
gi\|73958242 - gi\|73958242\|ref\|XP_848469.1\| PREDICTED: similar to CG15877-PA [Canis familiaris]	4.0E-37	[48..194]	[17..163]
CG050_RAT - Uncharacterized protein C7orf50 homolog OS=Rattus norvegicus PE=1 SV=1	1.0E-35	[1..194]	[1..193]
gi\|76654405 - gi\|76654405\|ref\|XP_601128.2\| PREDICTED: hypothetical protein XP_601128 [Bos taurus]	3.0E-35	[59..194]	[8..144]

Back

Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQKRKVPE VTEKKNKKLK KASAEGPLLG PEAAPSGEGA GSKGEAVLRP GLDAEPELSP  60
   61 EEQRVLERKL KKERKKEERQ RLREAGLVAQ HPPARRSGAE LALDYLCRWA QKHKNWRFQK 120
  121 TRQTWLLLHM YDSDKVPDEH FSTLLAYLEG LQGRARELTV QKAEALMREL DEEGSDPPLP 180
  181 GRAQRIRQVL QLLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits