YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL13A
Organism:	Homo sapiens
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL13A.

Description	E-value	Query Range	Subject Range
RL13A_BOVIN - 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3	6.0E-73	[1..203]	[1..203]
gi\|115389400, gi... - gi\|115389400\|ref\|XP_001212205.1\| serine palmitoyltransferase 2 [Aspergillus terreus NIH2624], gi\|114...	9.0E-73	[4..201]	[696..893]
gi\|77404207, gi\|... - gi\|77404207\|ref\|NP_775462.2\| ribosomal protein L13A [Rattus norvegicus], gi\|55778547\|gb\|AAH86382.1\| ...	3.0E-72	[1..203]	[1..203]
gi\|62897053 - gi\|62897053\|dbj\|BAD96467.1\| ribosomal protein L13a variant [Homo sapiens]	4.0E-72	[1..203]	[1..203]
RL13A_MACFA - 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3	5.0E-72	[1..203]	[1..203]
gi\|55644083, gi\|... - gi\|55644083\|ref\|XP_511050.1\| PREDICTED: similar to 23 kD highly basic protein isoform 5 [Pan troglod...	6.0E-72	[1..203]	[1..203]
RL13A_MOUSE - 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4 gi\|55715983 - gb\|AAH86250.1\| Unknown (protein for MGC:98767) [Xenopus laevis]	1.0E-71	[1..203]	[1..203]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVQVLVLD GRGHLLGRLA AIVAKQVLLG RKVVVVRCEG INISGNFYRN KLKYLAFLRK  60
   61 RMNTNPSRGP YHFRAPSRIF WRTVRGMLPH KTKRGQAALD RLKVFDGIPP PYDKKKRMVV 120
  121 PAALKVVRLK PTRKFAYLGR LAHEVGWKYQ AVTATLEEKR KEKAKIHYRK KKQLMRLRKQ 180
  181 AEKNVEKKID KYTEVLKTHG LLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1s1iM
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits