YRC Public Data Repository - Protein Structure Prediction

Protein:	GPKOW
Organism:	Homo sapiens
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPKOW.

Description	E-value	Query Range	Subject Range
gi\|62089198 - gi\|62089198\|dbj\|BAD93043.1\| G patch domain and KOW motifs variant [Homo sapiens]	0.0	[2..476]	[1..475]
gi\|109510496, gi... - gi\|109511556\|ref\|XP_001059240.1\| PREDICTED: similar to G patch domain and KOW motifs isoform 2 [Ratt...	0.0	[19..476]	[17..476]
gi\|62089558 - gi\|62089558\|gb\|AAH92224.1\| Gpkow protein [Mus musculus]	0.0	[19..476]	[16..487]
gi\|76659416 - gi\|76659416\|ref\|XP_616889.2\| PREDICTED: similar to G patch domain and KOW motifs isoform 1 [Bos taur...	0.0	[1..476]	[1..472]
gi\|74007394 - gi\|74007394\|ref\|XP_538033.2\| PREDICTED: similar to G patch domain and KOW motifs [Canis familiaris]	0.0	[1..476]	[1..484]
gi\|109130748 - gi\|109130748\|ref\|XP_001105674.1\| PREDICTED: similar to G patch domain and KOW motifs [Macaca mulatta...	0.0	[149..476]	[171..498]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSKEGVLP LTAASTAPIS FGFTRTSARR RLADSGDGAG PSPEEKDFLK TVEGRELQSV  60
   61 KPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPKELVIPL IQNGHRRQPP ARPPGPSTDT GALADGVVSQ AVKELIAESK KSLEERENAG  60
   61 VDPTLAIPMI QKGCTPSGEG ADSEPRAETV PEEANYEAVP VEAYGLAMLR GMGWKPGEGI 120
  121 GRTFNQVVKP RVNSLRPKGL GLGANLTEAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [214-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTPTGPSRM PRPDEEQEKD KEDQPQGLVP GGAVVVLSGP HRGLYGKVEG LDPDNVRAMV  60
   61 RLAVGSRVVT VSEYYLRPVS QQEFDKNTLD LRQQNGTASS RKTLWNQELY IQQDNSERKR 120
  121 KHLPDRQDG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.812	0.289	nucleus	b.59.1	XRCC4, N-terminal domain

Predicted Domain #4

Region A:
Residues: [343-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAAKSEKAAP RSQHWLHRDL RVRFVDNMYK GGQYYNTKMI IEDVLSPDTC VCRTDEGRVL  60
   61 EGLREDMLET LVPKAEGDRV MVVLGPQTGR VGHLLSRDRA RSRALVQLPR ENQVVELHYD 120
  121 AICQYMGPSD TDDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	2ckkA
Description:	No description for 2ckkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits