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View Structure Prediction Details

Protein: C12orf43
Organism: Homo sapiens
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C12orf43.

Description E-value Query
Range
Subject
Range
gi|21410437, gi|... - gi|39930441|ref|NP_082487.1| hypothetical protein LOC72357 [Mus musculus], gi|21410437|gb|AAH31162.1...
2.0E-96 [1..262] [1..256]
gi|114647386 - gi|114647386|ref|XP_001163318.1| PREDICTED: similar to Chromosome 12 open reading frame 43 isoform 2...
3.0E-93 [1..262] [1..294]
gi|62896819 - gi|62896819|dbj|BAD96350.1| hypothetical protein FLJ12448 variant [Homo sapiens]
3.0E-91 [1..262] [1..262]
CL043_RAT - Uncharacterized protein C12orf43 homolog OS=Rattus norvegicus PE=1 SV=1
2.0E-80 [1..262] [1..277]
gi|61555490, gi|... - gi|61555490|gb|AAX46722.1| hypothetical protein FLJ12448 [Bos taurus], gi|120419476|gb|ABM21557.1| h...
2.0E-67 [25..262] [19..256]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPSGTVSD SESSNSSSDA EELERCREAA MPAWGLEQRP HVAGKPRAGA ANSQLSTSQP  60
   61 SLRHKVNEHE QDGNELQTTP EFRAHVAKKL GALLDSFITI SEAAKEPAKA KVQKVALEDD 120
  121 GFRLFFTSVP GGREKEESPQ PRRKRQPSSS SEDSDEEWRR CREAAVSASD ILQESAIH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPGTVEKEAK KKRKLKKKAK KVASVDSAVA ATTPTSMATV QKQKSGELNG DQVSLGTKKK  60
   61 KKAKKASETS PFPPAKSATA IPAN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle