YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL34
Organism:	Homo sapiens
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL34.

Description	E-value	Query Range	Subject Range
RM34_MOUSE - 39S ribosomal protein L34, mitochondrial OS=Mus musculus GN=Mrpl34 PE=1 SV=1	1.0E-27	[1..92]	[1..92]
RM34_MACFA - 39S ribosomal protein L34, mitochondrial OS=Macaca fascicularis GN=MRPL34 PE=3 SV=1	3.0E-25	[1..92]	[1..92]
gi\|55741479 - ref\|NP_001006966.1\| mitochondrial ribosomal protein L34 [Rattus norvegicus] gi\|149036130, gi... - gi\|55741479\|ref\|NP_001006966.1\| mitochondrial ribosomal protein L34 [Rattus norvegicus], gi\|54261631...	6.0E-25	[1..92]	[1..91]
gi\|109123850, gi... - gi\|109123850\|ref\|XP_001113551.1\| PREDICTED: similar to mitochondrial ribosomal protein L34 isoform 3...	9.0E-25	[1..92]	[1..92]
gi\|114675984 - gi\|114675984\|ref\|XP_001161111.1\| PREDICTED: hypothetical protein [Pan troglodytes]	6.0E-15	[27..89]	[56..116]
gi\|39978267, gi\|... - gi\|39978267\|ref\|XP_370521.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA55361.1\| hypothetic...	1.0E-14	[8..91]	[65..144]
gi\|73986225 - gi\|73986225\|ref\|XP_852645.1\| PREDICTED: similar to mitochondrial ribosomal protein L34 [Canis famili...	2.0E-14	[1..92]	[1..86]
gi\|79313225, gi\|... - gi\|79313225\|ref\|NP_001030692.1\| structural constituent of ribosome [Arabidopsis thaliana], gi\|298243...	9.0E-14	[32..91]	[94..146]
gi\|49652964, gi\|... - gi\|50413677\|ref\|XP_457299.1\| hypothetical protein DEHA0B07898g [Debaryomyces hansenii CBS767], gi\|49... gi\|49652964 - gi\|49652964\|emb\|CAG85302.1\| DEHA2B07876p [Debaryomyces hansenii]	6.0E-13	[38..92]	[68..122]
gi\|68355922 - gi\|68355922\|ref\|XP_691339.1\| PREDICTED: hypothetical protein [Danio rerio]	2.0E-12	[37..92]	[66..121]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLAGSLLG PTSRSAALLG GRWLQPRAWL GFPDAWGLPT PQQARGKARG NEYQPSNIKR  60
   61 KNKHGWVRRL STPAGVQVIL RRMLKGRKSL SH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits