| Protein: | COPB2 |
| Organism: | Homo sapiens |
| Length: | 906 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPB2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..906] | [1..906] |
|
|
0.0 | [1..906] | [1..906] |
|
|
0.0 | [1..906] | [1..906] |
|
|
0.0 | [1..906] | [1..906] |
|
|
0.0 | [2..906] | [130..1034] |
|
|
0.0 | [1..906] | [1..905] |
|
|
0.0 | [1..906] | [1..905] |
|
|
0.0 | [1..905] | [1..915] |
|
|
0.0 | [1..906] | [1..920] |
|
Region A: Residues: [1-300] |
1 11 21 31 41 51
| | | | | |
1 MPLRLDIKRK LTARSDRVKS VDLHPTEPWM LASLYNGSVC VWNHETQTLV KTFEVCDLPV 60
61 RAAKFVARKN WVVTGADDMQ IRVFNYNTLE RVHMFEAHSD YIRCIAVHPT QPFILTSSDD 120
121 MLIKLWDWDK KWSCSQVFEG HTHYVMQIVI NPKDNNQFAS ASLDRTIKVW QLGSSSPNFT 180
181 LEGHEKGVNC IDYYSGGDKP YLISGADDRL VKIWDYQNKT CVQTLEGHAQ NVSCASFHPE 240
241 LPIIITGSED GTVRIWHSST YRLESTLNYG MERVWCVASL RGSNNVALGY DEGSIIVKLG 300
301
|
| Detection Method: |  |
| Confidence: | 71.045757 |
| Match: | 2gnqA |
| Description: | No description for 2gnqA was found. |
|
Region A: Residues: [301-681] |
1 11 21 31 41 51
| | | | | |
1 REEPAMSMDA NGKIIWAKHS EVQQANLKAM GDAEIKDGER LPLAVKDMGS CEIYPQTIQH 60
61 NPNGRFVVVC GDGEYIIYTA MALRNKSFGS AQEFAWAHDS SEYAIRESNS IVKIFKNFKE 120
121 KKSFKPDFGA ESIYGGFLLG VRSVNGLAFY DWDNTELIRR IEIQPKHIFW SDSGELVCIA 180
181 TEESFFILKY LSEKVLAAQE THEGVTEDGI EDAFEVLGEI QEIVKTGLWV GDCFIYTSSV 240
241 NRLNYYVGGE IVTIAHLDRT MYLLGYIPKD NRLYLGDKEL NIISYSLLVS VLEYQTAVMR 300
301 RDFSMADKVL PTIPKEQRTR VAHFLEKQGF KQQALTVSTD PEHRFELALQ LGELKIAYQL 360
361 AVEAESEQKW KQLAELAISK C
|
| Detection Method: | |
| Confidence: | 4.09 |
| Match: | 1nexB |
| Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [682-827] |
1 11 21 31 41 51
| | | | | |
1 QFGLAQECLH HAQDYGGLLL LATASGNANM VNKLAEGAER DGKNNVAFMS YFLQGKVDAC 60
61 LELLIRTGRL PEAAFLARTY LPSQVSRVVK LWRENLSKVN QKAAESLADP TEYENLFPGL 120
121 KEAFVVEEWV KETHADLWPA KQYPLV
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [828-906] |
1 11 21 31 41 51
| | | | | |
1 TPNEERNVME EGKDFQPSRS TAQQELDGKP ASPTPVIVAS HTANKEEKSL LELEVDLDNL 60
61 ELEDIDTTDI NLDEDILDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
