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View Structure Prediction Details

Protein: gi|29734033, gi|...
Organism: Homo sapiens
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29734033, gi|....

Description E-value Query
Range
Subject
Range
gi|114625886 - gi|114625886|ref|XP_520149.2| PREDICTED: similar to OTTHUMP00000021786 [Pan troglodytes]
2.0E-74 [1..499] [264..762]
gi|109481333 - gi|109481333|ref|XP_001064779.1| PREDICTED: similar to keratin Kb40 [Rattus norvegicus]
2.0E-70 [2..421] [129..569]
gi|73996557 - gi|73996557|ref|XP_850166.1| PREDICTED: similar to keratin, hair, basic, 3 [Canis familiaris]
1.0E-69 [2..420] [97..515]
gi|109096771 - gi|109096771|ref|XP_001093676.1| PREDICTED: keratin, hair, basic, 4 [Macaca mulatta]
1.0E-68 [3..420] [40..478]
gi|42760016 - gi|42760016|emb|CAF31524.1| type II hair keratin 4 [Homo sapiens]
5.0E-67 [2..420] [58..476]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPSGISTW LSLPVSTPAS ITSIRVTQKS SGPWAFSSCT YVSGPGVCIS SLSCSRVGSS  60
   61 SFRGGLGGGY GGASGMGGII AIMVNQSLLS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLNLEVDPNI QAVCTQEKEQ IKTLNNKFAS FIDKVWFLEQ QNKVLETKWS LLQQQKMARS  60
   61 NMDNMLESYI NNLRRQLETL GQEKLKLEAE LGNMQGLGED FKNKYEDEIN KHTEVENEFV 120
  121 LIKKDVDEAY MNKAELESLL EGLTDEINFL RQLYEEEIRE LQSQISDMSM VLSMDYSCSR 180
  181 DMDSIIPEVK VQYEEIANCS RAEAESMYQI KYEELQTLAG KYGDDLSRTK TEISEMNRNI 240
  241 SWLQAETEGL KGQRASLEAA ITDAEQRGEL AVKDANAKLS ELEAALQRAK QDMMGQLREY 300
  301 QELMNVGLTL DIEIATYRKL LEGEESRLES GMQNVSIHTK TTSSYAGGLS SAYGGLTSPG 360
  361 IIYRLGSSFG SAAGSSSFSR TSSTRAVVVR KIETHDGKLE SESSDVLSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2dfsA
Description: No description for 2dfsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle