YRC Public Data Repository - Protein Structure Prediction

Protein:	SDHAF2
Organism:	Homo sapiens
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHAF2.

Description	E-value	Query Range	Subject Range
SDHF2_MOUSE - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Mus musculus GN=Sdhaf2 PE=1 SV=1	2.0E-58	[1..165]	[1..163]
SDHF2_RAT - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Rattus norvegicus GN=Sdhaf2 PE=2 SV=1	1.0E-57	[1..166]	[1..164]
EMI5_PONPY - Protein EMI5 homolog, mitochondrial precursor - Pongo pygmaeus (Orangutan) SDHF2_PONAB - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Pongo abelii GN=SDHAF2 PE=2 SV=1	5.0E-56	[1..166]	[1..166]
SDHF2_BOVIN - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Bos taurus GN=SDHAF2 PE=2 SV=1	4.0E-54	[1..165]	[1..165]
IPI00978638, tr\|... - Uncharacterized protein OS=Homo sapiens PE=4 SV=1, IPI:IPI00978638.2\|TREMBL:F5GYJ5\|ENSEMBL:ENSP00000... gi\|109105927, gi... - gi\|109105927\|ref\|XP_001082231.1\| PREDICTED: similar to CG14757-PA isoform 2 [Macaca mulatta], gi\|109... gi\|9929929 - gi\|9929929\|dbj\|BAB12121.1\| hypothetical protein [Macaca fascicularis]	2.0E-53	[13..166]	[1..154]
gi\|73983849 - gi\|73983849\|ref\|XP_533273.2\| PREDICTED: similar to CG14757-PA [Canis familiaris]	7.0E-52	[1..165]	[1..164]
CG12895-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG12895 (CG12895, FBgn0033523). It is a prote...	6.0E-46	[7..158]	[5..156]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTVFSTS SLMLALSRHS LLSPLLSVTS FRRFYRGDSP TDSQKDMIEI PLPPWQERTD  60
   61 ESIETKRARL LYESRKRGML ENCILLSLFA KEHLQHMTEK QLNLYDRLIN EPSNDWDIYY 120
  121 WATEAKPAPE IFENEVMALL RDFAKNKNKE QRLRAPDLEY LFEKPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2jr5A
Description:	No description for 2jr5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits