YRC Public Data Repository - Protein Structure Prediction

Protein:	BET5_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET5_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|39977065, gi\|... - gi\|39977065\|ref\|XP_369920.1\| hypothetical protein MG06435.4 [Magnaporthe grisea 70-15], gb\|EAA56464....	186.0	[0..1]	[152..1]
gi\|114188871, gi... - gi\|115438398\|ref\|XP_001218056.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	182.0	[0..1]	[149..1]
gi\|46125127, gi\|... - gi\|46125127\|ref\|XP_387117.1\| hypothetical protein FG06941.1 [Gibberella zeae PH-1], gi\|42554145\|gb\|E...	182.0	[0..1]	[152..1]
gi\|67903682, gi\|... - gi\|67903682\|ref\|XP_682097.1\| hypothetical protein AN8828.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	180.0	[0..1]	[150..1]
gi\|169765225 - gi\|169765225\|ref\|XP_001817084.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220690443, gi... - gi\|238503478\|ref\|XP_002382972.1\| TRAPP complex subunit (Bet5), putative [Aspergillus flavus NRRL3357... gi\|83764938 - gi\|83764938\|dbj\|BAE55082.1\| unnamed protein product [Aspergillus oryzae]	179.0	[0..1]	[154..1]
gi\|119182367, gi... - gi\|90301107\|gb\|EAS30738.1\| hypothetical protein CIMG_06217 [Coccidioides immitis RS], gi\|119182367\|r...	179.0	[0..1]	[151..1]
gi\|85109584 - gi\|85109584\|ref\|XP_962988.1\| hypothetical protein NCU06176 [Neurospora crassa OR74A] gi\|28924635, gi\|... - gi\|32411101\|ref\|XP_326031.1\| hypothetical protein [Neurospora crassa], gi\|28924635\|gb\|EAA33752.1\| co...	172.0	[0..1]	[152..1]
TPPC1_RAT - Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1 TPPC1_MOUSE - Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1	172.0	[0..1]	[155..1]
tr\|G1TDG9\|G1TDG9... - pep:novel chromosome:oryCun2:19:11275596:11276772:1 gene:ENSOCUG00000017332 transcript:ENSOCUT000000... gi\|73955584, gi\|... - gi\|73955590\|ref\|XP_859798.1\| PREDICTED: similar to trafficking protein particle complex 1 isoform 5 ... gi\|109113165, gi... - gi\|109113165\|ref\|XP_001111325.1\| PREDICTED: similar to trafficking protein particle complex 1 isofor... TPPC1_BOVIN - Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1 ENSCJAT00000028718 - null gi\|149724275 - gi\|149724275\|ref\|XP_001504850.1\| PREDICTED: similar to trafficking protein particle complex 1 [Equus... tr\|M3WYU8\|M3WYU8... - Trafficking protein particle complex 1 OS=Felis catus GN=TRAPPC1 PE=4 SV=1 TRAPPC1, TPCN1 - trafficking protein particle complex 1, two pore segment channel 1 gi\|114666264 - gi\|114666264\|ref\|XP_001172364.1\| PREDICTED: trafficking protein particle complex 1 [Pan troglodytes] CCDS11125.1_1 - null gi\|123979914 - gi\|123979914\|gb\|ABM81786.1\| trafficking protein particle complex 1 [synthetic construct]	170.0	[0..1]	[155..1]
gi\|88183884, gi\|... - gi\|88183884\|gb\|EAQ91352.1\| hypothetical protein CHGG_03287 [Chaetomium globosum CBS 148.51], gi\|1162...	167.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIYAFYIYS RKCECVFAHR WKPSDRNSME TLVSQLEQNS IEDDMEKLIF GVVFSLRNMV  60
   61 KKITADQDQF MSYTTSKYKL HFYETPTNLR LIFITNPKID SLTHVLQQIY TTLYVEFVVK 120
  121 HPLYTHVPPS AEEGGINCEI FRITLDRFVR TLSCF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	2j3tC
Description:	No description for 2j3tC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits