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View Structure Prediction Details

Protein: TFG
Organism: Homo sapiens
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFG.

Description E-value Query
Range
Subject
Range
gi|1006668 - gi|1006668|emb|CAA59936.1| p68 TRK-T3 oncoprotein [Homo sapiens]
7.0E-56 [1..202] [1..202]
gi|74002470 - gi|74002470|ref|XP_848568.1| PREDICTED: similar to TRK-fused gene isoform 2 [Canis familiaris]
2.0E-53 [1..273] [1..274]
gi|67968365 - gi|67968365|dbj|BAE00105.1| TRK-fused gene protein [Rattus norvegicus]
5.0E-48 [1..254] [1..255]
gi|76671226 - gi|76671226|ref|XP_869924.1| PREDICTED: similar to TRK-fused gene [Bos taurus]
3.0E-44 [1..245] [1..246]
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
1.0E-42 [33..399] [1368..1740]
gi|67970860 - gi|67970860|dbj|BAE01772.1| unnamed protein product [Macaca fascicularis]
gi|109032789, gi... - gi|109032789|ref|XP_001095002.1| PREDICTED: similar to TRK-fused gene isoform 6 [Macaca mulatta], gi...
6.0E-42 [1..400] [1..400]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGQLDLSGK LIIKAQLGED IRRIPIHNED ITYDELVLMM QRVFRGKLLS NDEVTIKYKD  60
   61 EDGDLITIFD SSDLSFAIQC SRILKLTLFV NGQPRPLESS QVKYLRRELI ELRNKVNRLL 120
  121 DSLEPPGEPG PSTNIPENDT VDGREEKSAS DSSGKQSTQV MAASMSAFDP LKNQDEINKN 180
  181 VMSAFGLTDD QVSGPPSAPA EDRSGTPDSI ASSSSAAHPP GVQPQQPPYT GAQT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1jmmA
Description: V-region of surface antigen I/II (SA I/II, PAC)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [235-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAGQIEGQMY QQYQQQAGYG AQQPQAPPQQ PQQYGIQYSA SYSQQTGPQQ PQQFQGYGQQ  60
   61 PTSQAPAPAF SGQPQQLPAQ PPQQYQASNY PAQTYTAQTS QPTNYTVAPA SQPGMAPSQP 120
  121 GAYQPRPGFT SLPGSTMTPP PSGPNPYARN RPPFGQGYTQ PGPGYR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle