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View Structure Prediction Details

Protein: gi|436224
Organism: Homo sapiens
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|436224.

Description E-value Query
Range
Subject
Range
gi|74151271, gi|... - gi|74151315|dbj|BAE38786.1| unnamed protein product [Mus musculus], gi|74151271|dbj|BAE38770.1| unna...
1.0E-51 [45..335] [1..291]
TM41B_RAT - Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1
5.0E-50 [45..335] [1..291]
TM41B_PONAB - Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1
TM41B_PONPY - Transmembrane protein 41B - Pongo pygmaeus (Orangutan)
2.0E-49 [45..335] [1..291]
TMEM41B - transmembrane protein 41B
gi|168274308 - gi|168274308|dbj|BAG09574.1| transmembrane protein 41B [synthetic construct]
4.0E-49 [45..335] [1..291]
gi|149773562, gi... - gi|76675157|ref|XP_873471.1| PREDICTED: hypothetical protein [Bos taurus], gi|149773562|ref|NP_00109...
2.0E-47 [45..335] [1..291]
gi|73988453, gi|... - gi|73988457|ref|XP_863743.1| PREDICTED: similar to transmembrane protein 41B isoform 4 [Canis famili...
2.0E-47 [45..335] [1..291]
gi|62858679 - gi|62858679|ref|NP_001016955.1| hypothetical protein LOC549709 [Xenopus (Silurana) tropicalis]
3.0E-39 [80..335] [23..278]
TM41B_XENLA - Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1
3.0E-39 [85..335] [28..278]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVSGEEVAPE VALAVALRRS KEPATEFCCL GGAAPHRSLH LAAAMAKGRV AERSQLGAHH  60
   61 TTPVGDGAAG TRGLAAPGSR DHQKEKSWVE AGSARMSLLI LVSIFLSAAF VMFLVYKNFP 120
  121 QLSEEERVNM KVPRDMDDAK ALGKVLSKYK DTFYVQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [157-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLVAYFATYI FLQTFAIPGS IFLSILSGFL YPFPLALFLV CLCSGLGASF CYMLSYLVGR  60
   61 PVVYKYLTEK AVKWSQQVER HREHLINYII FLRITPFLPN WFINITSPVI NVPLKVFFIG 120
  121 TFLGVAPPSF VAIKAGTTLY QLTTAGEAVS WNSIFILMIL AVLSILPAIF QKKLKQKFE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 29.823909
Match: PF09335.2
Description: No description for PF09335.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle