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View Structure Prediction Details

Protein: KEG_ARATH
Organism: Arabidopsis thaliana
Length: 1625 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for KEG_ARATH.

Predicted Domain #1
Region A:
Residues: [1-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGRVKVPCC SVCHTRYNED ERVPLLLQCG HGFCKDCLSK MFSTSSDTTL TCPRCRHVSV  60
   61 VGNSVQGLRK NYAMLALIHA ASGGANFDCD YTDDEDDDDE EDGSDEDGAR AARGFHASSS 120
  121 INSLCGPVIE VGAHPEMKLV RQIGEESSSG GFGGVEMWDA TVAGGGGRCK HRVAVKKMTL 180
  181 TEDMDVEWMQ GQLESLRRAS MWCRNVCTFH GVVKMDGSLC LLMDRCFGSV QSEMQRNEGR 240
  241 LTLEQILRYG ADVARGVAEL HAAGVICMNI KPSNLLLDAS GNAVVSDYGL APILKKPTCQ 300
  301 KTRPEFDSSK VTLYTDCVTL SPHYTAPEAW GPVKKLFWED ASGVSPESDA WSFGCTLVEM 360
  361 CTGSTPWDGL SREEIFQAVV KARKVPPQYE RIVGVGIPRE LWKMIGECLQ FKPSKRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.09691
Match: 2acxA
Description: No description for 2acxA was found.

Predicted Domain #2
Region A:
Residues: [418-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFNAMLATFL RHLQEIPRSP SASPDNGIAK ICEVNIVQAP RATNIGVFQD NPNNLHRVVL  60
   61 EGDFEGVRNI LAKAAAGGGG S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.69897
Match: 2jedA
Description: No description for 2jedA was found.

Predicted Domain #3
Region A:
Residues: [499-828]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVRSLLEAQN ADGQSALHLA CRRGSAELVE AILEYGEANV DIVDKDGDPP LVFALAAGSP  60
   61 QCVHVLIKKG ANVRSRLREG SGPSVAHVCS YHGQPDCMRE LLVAGADPNA VDDEGETVLH 120
  121 RAVAKKYTDC AIVILENGGS RSMTVSNAKC LTPLHMCVAT WNVAVIKRWV EVSSPEEISQ 180
  181 AINIPSPVGT ALCMAASIRK DHEKEGRELV QILLAAGADP TAQDAQHGRT ALHTAAMANN 240
  241 VELVRVILDA GVNANIRNVH NTIPLHMALA RGANSCVSLL LESGSDCNIQ DDEGDNAFHI 300
  301 AADAAKMIRE NLDWLIVMLR SPDAAVDVRN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 1wdyA
Description: Crystal structure of ribonuclease
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [829-1257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSGKTVRDFL EALPREWISE DLMEALLKRG VHLSPTIYEV GDWVKFKRGI TTPLHGWQGA  60
   61 KPKSVGFVQT ILEKEDMIIA FCSGEARVLA NEVVKLIPLD RGQHVRLRAD VKEPRFGWRG 120
  121 QSRDSVGTVL CVDEDGILRV GFPGASRGWK ADPAEMERVE EFKVGDWVRI RQNLTSAKHG 180
  181 FGSVVPGSMG IVYCVRPDSS LLVELSYLPN PWHCEPEEVE PVAPFRIGDR VCVKRSVAEP 240
  241 RYAWGGETHH SVGKISEIEN DGLLIIEIPN RPIPWQADPS DMEKIDDFKV GDWVRVKASV 300
  301 SSPKYGWEDI TRNSIGVMHS LDEDGDVGIA FCFRSKPFSC SVTDVEKVTP FHVGQEIHMT 360
  361 PSITQPRLGW SNETPATIGK VMRIDMDGTL SAQVTGRQTL WRVSPGDAEL LSGFEVGDWV 420
  421 RSKPSLGNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1n11A
Description: Ankyrin-R
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [1258-1389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSYDWSNVGR ESIAVVHSIQ ETGYLELACC FRKGRWSTHY TDLEKIPALK VGQFVHFQKG  60
   61 ITEPRWGWRA AKPDSRGIIT TVHADGEVRV AFFGLPGLWR GDPADLEVEP MFEVGEWVRL 120
  121 REGVSCWKSV GP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1390-1625]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVGVVHGVG YEGDEWDGTT SVSFCGEQER WAGPTSHLEK AKKLVVGQKT RVKLAVKQPR  60
   61 FGWSGHSHGS VGTISAIDAD GKLRIYTPAG SKTWMLDPSE VETIEEEELK IGDWVRVKAS 120
  121 ITTPTYQWGE VNPSSTGVVH RMEDGDLCVS FCFLDRLWLC KAGELERIRP FRIGDRVKIK 180
  181 DGLVTPRWGW GMETHASKGH VVGVDANGKL RIKFLWREGR PWIGDPADIV LDETSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle