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View Structure Prediction Details

Protein: MRPL43
Organism: Homo sapiens
Length: 215 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL43.

Description E-value Query
Range
Subject
Range
gi|56462545, gi|... - gi|56462545|emb|CAI10920.1| mitochondrial ribosomal protein L43 [Homo sapiens], gi|31419637|gb|AAH53...
1.0E-88 [1..198] [1..198]
gi|114632382 - gi|114632382|ref|XP_001168998.1| PREDICTED: mitochondrial ribosomal protein L43 isoform 1 [Pan trogl...
1.0E-66 [1..155] [1..155]
gi|109090291 - gi|109090291|ref|XP_001109337.1| PREDICTED: similar to mitochondrial ribosomal protein L43 isoform b...
7.0E-64 [1..155] [1..155]
RM43_BOVIN - 39S ribosomal protein L43, mitochondrial OS=Bos taurus GN=MRPL43 PE=2 SV=2
2.0E-63 [1..155] [1..155]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARGTPSRF LASVLHNGLG RYVQQLQRLS FSVSRDGASS RGAREFVERE VIDFARRNPG  60
   61 VVIYVNSRPC CVPRVVAEYL NGAVREESIH CKSVEEISTL VQKLADQSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1s3aA
Description: NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [110-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDVIRIRKPF HTDNPSIQGQ WHPFTNKPTT FRGLRPREVQ DPAPAQDTGL RLSAVAPQIL  60
   61 LPGWPDPPDL PTVDPISSSL TSAPAPMLSA VSCLPIVPAL TTVCSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle