| Protein: | NDC80 |
| Organism: | Homo sapiens |
| Length: | 642 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDC80.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-47 | [84..642] | [841..1391] |
|
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5.0E-47 | [84..642] | [842..1392] |
|
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5.0E-47 | [84..642] | [839..1389] |
|
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6.0E-47 | [84..642] | [843..1393] |
|
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7.0E-47 | [84..642] | [841..1391] |
|
|
1.0E-46 | [84..642] | [833..1383] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MKRSSVSSGG AGRLSMQELR SQDVNKQGLY TPQTKEKPTF GKLSINKPTS ERKVSLFGKR 60
61 TSGHGSRNSQ LGIFSSSEKI KDP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [84-398] |
1 11 21 31 41 51
| | | | | |
1 RPLNDKAFIQ QCIRQLCEFL TENGYAHNVS MKSLQAPSVK DFLKIFTFLY GFLCPSYELP 60
61 DTKFEEEVPR IFKDLGYPFA LSKSSMYTVG APHTWPHIVA ALVWLIDCIK IHTAMKESSP 120
121 LFDDGQPWGE ETEDGIMHNK LFLDYTIKCY ESFMSGADSF DEMNAELQSK LKDLFNVDAF 180
181 KLESLEAKNR ALNEQIARLE QEREKEPNRL ESLRKLKASL QGDVQKYQAY MSNLESHSAI 240
241 LDQKLNGLNE EIARVELECE TIKQENTRLQ NIIDNQKYSV ADIERINHER NELQQTINKL 300
301 TKDLEAEQQK LWNEE
|
| Detection Method: | |
| Confidence: | 20.045757 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [399-461] |
1 11 21 31 41 51
| | | | | |
1 LKYARGKEAI ETQLAEYHKL ARKLKLIPKG AENSKGYDFE IKFNPEAGAN CLVKYRAQVY 60
61 VPL
|
| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [462-642] |
1 11 21 31 41 51
| | | | | |
1 KELLNETEEE INKALNKKMG LEDTLEQLNA MITESKRSVR TLKEEVQKLD DLYQQKIKEA 60
61 EEEDEKCASE LESLEKHKHL LESTVNQGLS EAMNELDAVQ REYQLVVQTT TEERRKVGNN 120
121 LQRLLEMVAT HVGSVEKHLE EQIAKVDREY EECMSEDLSE NIKEIRDKYE KKATLIKSSE 180
181 E
|
| Detection Method: | |
| Confidence: | 1.51 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
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