YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL11
Organism:	Homo sapiens
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL11.

Description	E-value	Query Range	Subject Range
RL11_PONAB - 60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3 RL11_PONPY - 60S ribosomal protein L11 - Pongo pygmaeus (Orangutan)	261.0	[0..1]	[178..1]
RL11_PIG - 60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=1 SV=3	258.0	[0..1]	[177..1]
gi\|19851919 - gi\|19851919\|gb\|AAL99919.1\|AF432212_1 CLL-associated antigen KW-12 [Homo sapiens] tr\|F2Z3S4\|F2Z3S4_RAT - Uncharacterized protein (Fragment) OS=Rattus norvegicus GN=Rpl11 PE=4 SV=1	258.0	[0..3]	[178..1]
gi\|12851485 - gi\|12851485\|dbj\|BAB29059.1\| unnamed protein product [Mus musculus]	257.0	[0..1]	[178..1]
gi\|60654283 - gi\|60654283\|gb\|AAX29834.1\| ribosomal protein L11 [synthetic construct]	257.0	[0..4]	[178..3]
gi\|60417168 - gi\|60417168\|emb\|CAH57695.1\| 60S ribosomal protein L11 [Platichthys flesus]	254.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQDQGEKEN PMRELRIRKL CLNICVGESG DRLTRAAKVL EQLTGQTPVF SKARYTVRSF  60
   61 GIRRNEKIAV HCTVRGAKAE EILEKGLKVR EYELRKNNFS DTGNFGFGIQ EHIDLGIKYD 120
  121 PSIGIYGLDF YVVLGRPGFS IADKKRRTGC IGAKHRISKE EAMRWFQQKY DGIILPGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.30103
Match:	1s1iJ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits