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View Structure Prediction Details

Protein: CE39953
Organism: Caenorhabditis elegans
Length: 282 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39953.

Description E-value Query
Range
Subject
Range
CE18401 - WBGene00012870 status:Partially_confirmed TR:O62467 protein_id:CAA16353.1
299.0 [0..3] [281..58]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAAVKCNPK VQQDQVNQNA NNLMLLPKCL EMIGDKAKSS ELHVAFDVPT NQTTFQYSIV  60
   61 WEDSSPDADE KYRVSCTEAN KIMLALKEKN IKKTSKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYKITNEKS RTNSLREKAS ETLNNGLPFP PDLRSRSQQC EVSESRSSSV TASSSAPTST  60
   61 TCYDSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [164-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTKSDTSKKS SKKSRKSSRS SKVPHRKFKN VGSLDENGCV NVKVVVIERP IIRDKLRPIA  60
   61 FIDSVLSAHV KSILINVLHE NYEGLPAEQL IKSTNVLFAF LDKNGVQKLR RVRKSDVDH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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