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View Structure Prediction Details

Protein: NEK5_ARATH
Organism: Arabidopsis thaliana
Length: 956 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for NEK5_ARATH.

Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRMDQYEL MEQIGRGAFG AAILVHHKAE RKKYVLKKIR LARQTERCRR SAHQEMSLIA  60
   61 RVQHPYIVEF KEAWVEKGCY VCIVTGYCEG GDMAELMKKS NGVYFPEEKL CKWFTQLLLA 120
  121 VEYLHSNYVL HRDLKCSNIF LTKDQDVRLG DFGLAKTLKA DDLTSSVVGT PNYMCPELLA 180
  181 DIPYGFKSDI WSLGCCIYEM AAYRPAFKAF DMAGLISKVN RSSIGPLPPC YSPSLKALIK 240
  241 GMLRKNPEYR PNASEILKHP YLQPYVEQYR PTLSAASITP EKPLNSREGR RSMAESQNSN 300
  301 SSSEKDNFYV SDKNIRYVVP SNGNKVTETD SGFVDDEDIL DHVQQSAENG NLQSVSAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.39794
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [359-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPDGHGILKP VHSDQRPDVI QPRHPKTIRN IMMVLKEEKA RENGSPMRSN RSRPSSVPTQ  60
   61 KNNVET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [425-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKIPKLGDI AHSSKTNAST PIPPSKLASD SARTPGSFPP KHHMPVIDSS PKLKPRNDRI  60
   61 SP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [487-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPAAKHEAEE AMSVKRRQRT PPTLPRRTSL IAHQSRQLGA DISNMAAKET AKLHPSVPSE  60
   61 SETNSHQSRV HASPVSTTPE PKRTSVGSAK GMQSESSNSI SSSLSMQAFE LCDDASTPYI 120
  121 DMTEHTTPDD HRRSCHSEYS YSFPDISSEM MIRRDEHSTS MRLTEIPDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [656-956]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSGVQNTIAH HQPEREQGSC PTVLKDDSPA TLQSYEPNTS QHQHGDDKFT VKEFVSSVPG  60
   61 PAPLPLHVEP SHQVNSHSDN KTSVMSQNSA LEKNNSHSHP HPVVDDVIHV IRHSSFRVGS 120
  121 DQPVMESVEV GVQNVDMGKL INVVRDEMEV RKGATPSESP TTRSIISEPD SRTEPRPKEP 180
  181 DPITNYSETK SFNSCSDSSP AETRTNSFVP EEETTPTPPV KETLDIKSFR QRAEALEGLL 240
  241 ELSADLLEQS RLEELAIVLQ PFGKNKVSPR ETAIWLAKSL KGMMIEDINN NNSSGSSRNC 300
  301 S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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