YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS18
Organism:	Homo sapiens
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS18.

Description	E-value	Query Range	Subject Range
RS18_DANRE - 40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1	4.0E-56	[1..152]	[1..152]
gi\|67083901 - gi\|67083901\|gb\|AAY66885.1\| ribosomal protein S18 [Ixodes scapularis]	5.0E-56	[1..152]	[1..152]
gi\|116488056 - gi\|116488056\|gb\|ABJ98610.1\| 40S ribosomal protein S18 [Scophthalmus maximus] gi\|60417186 - gi\|60417186\|emb\|CAH57704.1\| 40S ribosomal protein S18 [Platichthys flesus] gi\|124300823 - gi\|124300823\|dbj\|BAF45907.1\| ribosomal protein S18 [Solea senegalensis]	5.0E-56	[1..152]	[1..152]
RS18_ICTPU - 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1	5.0E-56	[1..152]	[1..152]
gi\|109097924 - gi\|109097924\|ref\|XP_001085646.1\| PREDICTED: similar to ribosomal protein S18 [Macaca mulatta]	5.0E-56	[1..152]	[1..152]
gi\|157124077, gi... - gi\|94468520\|gb\|ABF18109.1\| ribosomal protein S18 [Aedes aegypti], gi\|157124077\|ref\|XP_001660320.1\| 4...	5.0E-56	[1..152]	[1..152]
gi\|113415154, gi... - gi\|169165938\|ref\|XP_001720068.1\| PREDICTED: hypothetical protein [Homo sapiens], gi\|147900901\|ref\|NP...	7.0E-56	[1..152]	[1..152]
gi\|166796647, gi... - gi\|62858571\|ref\|NP_001016358.1\| ribosomal protein S18 [Xenopus (Silurana) tropicalis], gi\|166796647\|...	8.0E-56	[1..152]	[1..152]
gi\|46329492, gi\|... - gi\|46329492\|gb\|AAH68873.1\| MGC82306 protein [Xenopus laevis], gi\|147905776\|ref\|NP_001084747.1\| hypot...	1.0E-55	[1..152]	[1..152]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVIPEKFQ HILRVLNTNI DGRRKIAFAI TAIKGVGRRY AHVVLRKADI DLTKRAGELT  60
   61 EDEVERVITI MQNPRQYKIP DWFLNRQKDV KDGKYSQVLA NGLDNKLRED LERLKKIRAH 120
  121 RGLRHFWGLR VRGQHTKTTG RRGRTVGVSK KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.045757
Match:	1s1hM
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits